RNA id: TCONS_00044159


Basic Information

Item Value
RNA id TCONS_00044159
length 2118
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_022387
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26183772 ~ 26228077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTGCACAGGTCGATCTGCTGCGCGTCAAAGTAGAGGAGAAGAGCAGGGACAGCTTTGACAAAGCcaccaaagaaaagaaaaagaagaaaaaacgcGAATGTTCGCCGCCCGATGACAAGCGTGAGAGATCGGAGAAGGaagcaaagaaaataaagctACATCACCACCAACACAGTCACCAACATGAGCAACAACGAGCGCATCCACCGCACCAACAACAGAACAACCAAGCGCGCAACTTCAGCAAAGAGCAGGCACTCGTGCCACAccgccaccaccaccaccatcacaACCACAGCTCCAAGAAAGAAGTACCTCCGGTCTGGCCGCCGCGCAAAGTCACACCAGCAGCAGGAGCAGCAGTAGCCCACGTCCCGCAGAAGACGGTCCAGCCGCCGTccccgctgttcactttcacgcCGCTCAAAGTAGCGAAGGCCAAGCCCCTCAACAACAAGCCCAAACACATCGAGAAGGACGCCAAACTCAAGCCCAAGAAGGAAAACGCCGAGGCTAACGTCAAAGTGGGGGAGTGCAAGAAAAAGAAAGAGCCCCACGGCGAGAATGGCAAAACCCAGACCCTGGAGGAATACCTactgaagaaaaagaagaagaagaagcggCATCGCGAAGATGAGCGTGGCAAGAAGTTACGGATGCACCATAAGGAGGTCCAGACGGTGTGTTCAGGAGACACTCCACCGCTTTCTGAAGACCCTGTGGGACATGCGTACATCAAAGAAGAAAAAGACTTAGGGGAGTACGACGCTCCTAAAGAGGCGAAGAAGCCGTTCCTCACACATCAAGACCACTACATCCGCAGCTCGTGGCTTCAAACCAACACCTGCTTCAGCAGACTCATCCATGAGGAAAAGCAGCCCAACGGAGGGGCGTCCGTACTGCATGCTTATGCCGATGAACTGTCCTTACTTCGGCCCGGAGAAACGGAAAAGTTTGCCCAGGAATTTATGAAACTGGCCTTTGCTGAACAGCCTAAAGGAGCTGCACGTTACGCGCTCGCTGTGGTGCATGGAGCAGCTGCATACCTGCCCGACTTCTTGGACTATTTTGCCTTCAATTTCCCAAACACACCTGTCAAGGTGGAAATCCTTGGTAAAAAGGACATCGAGACCACCACCATTGCTAACTTCCACACCCAGgtGAGCCGAACTTACTGCTGTGGGACATATAGAGCCGGTCCCATGAGGCAGATCAGTCTCGTGGGTGCAGTAGATGAAGAGGTTGGAGATTTCTTCCCAGAGTTCTTGGACATGCTTGAGGAGTCTCCGTTTCTGAAGATGACTTTACCATGGGGCAGCCTGTCCAGTCTGAAGCTTGACTGCAGGTCCCAAAGCGATGACGGTCCCATCATGTGGGTCAGACCTGGCGAACAAATGGTTCCCACAGCCGACATGCCCAAGTCTCCGTTCAAGAGACGAAGATCAATGAACGAGATCAAGAACTTGCATTACCTCCCGAGAGCCAGTGAACCACGTGAGGTTCTGTTTGAGGATCGGACGCGAGCACATGCTGATCATGTTGGCCAGAGTTTCGACTGGCAGAGCACAGCAGCTGTGGGTGTCCTGAAAGCGGTGCATTTTGGGGAATGGAGTGACCAGCCACGGATAACCAAAGATGTGGTCTGTTTTCATGCTGAGGACTTTAATGATGTGGTTCAGAGGCTTCAGCTGGACTTGTATGAGCCGCCGGTGTCACAGTGTGTGCAGTGGGTGGACGATGCCAAACTCAATCAGTTACGGCGAGAAGGCATCCGCTACGTCCGAATGCAGCTCTGCGACGACGACATCTACTTCATCCCCCGCAACGTCATCCACCAGTTCAAAACGGTCTCAGCCGTGTGCAGCTTAGCGTGGCACATCCGCCTGAAGCAGTACCACtcggaggaagaagaagaagaggccAAAGAGCCGCAACCTGCGCCACCGCAGCCCGCAAAATCCGCCCGCACTGTTTACGCAGCTCCGTGTTCAGAGAGCAGTCCTTTCCCAGCAACCTCTCCTCTGTGCTCGTCCACACCAGAGCCAGTGCTTCCACCGGCTCCGGCTGAGCCCACGTCAGACTCCCAACTCAACGGCAGCCGGGCCACAGACTTC

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

Ensembl:

ensembl_id ENSDART00000162423

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045018 lncRNA downstream 390679 25789926 ~ 25793093 (-) True XLOC_022380
TCONS_00045017 lncRNA downstream 397688 25783695 ~ 25786084 (-) True XLOC_022379
TCONS_00045016 lncRNA downstream 397790 25783695 ~ 25785982 (-) False XLOC_022379
TCONS_00045015 lncRNA downstream 397867 25783695 ~ 25785905 (-) False XLOC_022379
TCONS_00044147 lncRNA downstream 409210 25771081 ~ 25774562 (-) True XLOC_022378
TCONS_00044167 lncRNA upstream 279733 26507810 ~ 26514894 (-) False XLOC_022389
TCONS_00044170 lncRNA upstream 291389 26519466 ~ 26522980 (-) False XLOC_022389
TCONS_00044169 lncRNA upstream 291389 26519466 ~ 26523026 (-) True XLOC_022389
TCONS_00044736 lncRNA upstream 452925 26681002 ~ 26725460 (-) True XLOC_022391
TCONS_00045019 lncRNA upstream 521330 26749407 ~ 26759469 (-) False XLOC_022393
TCONS_00044156 mRNA downstream 55108 26125676 ~ 26128664 (-) False XLOC_022386
TCONS_00044157 mRNA downstream 55108 26125756 ~ 26128664 (-) False XLOC_022386
TCONS_00044158 mRNA downstream 55179 26125945 ~ 26128593 (-) True XLOC_022386
TCONS_00044154 mRNA downstream 63491 26094481 ~ 26120281 (-) False XLOC_022385
TCONS_00044153 mRNA downstream 63491 26094481 ~ 26120281 (-) False XLOC_022385
TCONS_00044161 mRNA upstream 4108 26232185 ~ 26488622 (-) False XLOC_022388
TCONS_00044162 mRNA upstream 17088 26245165 ~ 26252103 (-) False XLOC_022388
TCONS_00044163 mRNA upstream 17088 26245165 ~ 26488622 (-) True XLOC_022388
TCONS_00044164 mRNA upstream 275799 26503876 ~ 26522765 (-) False XLOC_022389
TCONS_00044165 mRNA upstream 276030 26504107 ~ 26522765 (-) False XLOC_022389
TCONS_00044148 other downstream 390791 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044132 other downstream 1257424 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044131 other downstream 1334168 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044126 other downstream 1508469 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044122 other downstream 1601351 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044178 other upstream 447575 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044183 other upstream 591037 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044197 other upstream 978642 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044212 other upstream 1352087 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044226 other upstream 1580991 27809068 ~ 27822778 (-) True XLOC_022418

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_09608760_09615654.mRNA True 3104 mRNA 0.46 6 CI01000001 9608760 ~ 9617033 (-)
bowfin (Amia calva) AMCG00013735 True 5413 mRNA 0.44 6 CM030125.1 40610836 ~ 40622089 (+)