RNA id: TCONS_00044168


Basic Information

Item Value
RNA id TCONS_00044168
length 581
RNA type mRNA
GC content 0.39
exon number 3
gene id XLOC_022389
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 26503876 ~ 26523026 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCTTGTCATTTAACCCTGCTACTGGCTAGACCGTTTCATTTGCTATTTGGCTTGAAGATCTCTGTAGAACATCATGATCCTCCTGACTCCTACTTCTGAGCAGTGTGGCGTGCTTTTGGAGCAGATCTGTCTGTTTTGCTGATCGGTGGAAGACGAGGGGAGTGTTCATTTGCTAGTGGCACAGAAATTACTCTCTTTAAATGTACATGTGTTTATGCATGCTTCACTTACATAGAAAAGCAGCTTATGCCAAATAACGAAAGCTGTGTTGTCAAATGACAATTTTTTGTGTCTTTTCTCATGCGATATCTGCAAATGGTGGCTCTTTTTGATCTCTAGCATATTGCATAAAATGTGATGCGAATGATAATGTGAATGTCTGTAGCAAAAAGACACATTCAAGCCACTTGAGATGTTCGTTTAGATTTTATGCCCACTGATTTCCTTCAACACAAAGACCTCTTTGTGCGACTTCATTGAAAATcactgcagtgtttcagcatctTGGTCACACTTAAGGAAAAGCACTAGAATTTTAACAAGCCTTTCTTGcagttaatattttttcttttgtggtA

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-227 Predicted to enable phosphotransferase activity, for other substituted phosphate groups. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM269 (transmembrane protein 269).

Ensembl:

ensembl_id ENSDART00000143712

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044167 lncRNA downstream 2004 26507810 ~ 26514894 (-) False XLOC_022389
TCONS_00045018 lncRNA downstream 723805 25789926 ~ 25793093 (-) True XLOC_022380
TCONS_00045017 lncRNA downstream 730814 25783695 ~ 25786084 (-) True XLOC_022379
TCONS_00045016 lncRNA downstream 730916 25783695 ~ 25785982 (-) False XLOC_022379
TCONS_00045015 lncRNA downstream 730993 25783695 ~ 25785905 (-) False XLOC_022379
TCONS_00044736 lncRNA upstream 159032 26681002 ~ 26725460 (-) True XLOC_022391
TCONS_00045019 lncRNA upstream 227437 26749407 ~ 26759469 (-) False XLOC_022393
TCONS_00044737 lncRNA upstream 227903 26749873 ~ 26759560 (-) True XLOC_022393
TCONS_00045020 lncRNA upstream 439040 26961010 ~ 26967405 (-) False XLOC_022396
TCONS_00044194 lncRNA upstream 591490 27113460 ~ 27123123 (-) True XLOC_022398
TCONS_00044161 mRNA downstream 28276 26232185 ~ 26488622 (-) False XLOC_022388
TCONS_00044163 mRNA downstream 28276 26245165 ~ 26488622 (-) True XLOC_022388
TCONS_00044162 mRNA downstream 264795 26245165 ~ 26252103 (-) False XLOC_022388
TCONS_00044159 mRNA downstream 288821 26183772 ~ 26228077 (-) False XLOC_022387
TCONS_00044172 mRNA upstream 2028 26523998 ~ 26532696 (-) False XLOC_022390
TCONS_00044171 mRNA upstream 2028 26523998 ~ 26532696 (-) False XLOC_022390
TCONS_00044173 mRNA upstream 7948 26529918 ~ 26535875 (-) False XLOC_022390
TCONS_00044174 mRNA upstream 10247 26532217 ~ 26536055 (-) True XLOC_022390
TCONS_00044176 mRNA upstream 21746 26543716 ~ 26652273 (-) False XLOC_022391
TCONS_00044148 other downstream 723917 25789132 ~ 25792981 (-) False XLOC_022380
TCONS_00044132 other downstream 1590550 24880227 ~ 24926348 (-) True XLOC_022370
TCONS_00044131 other downstream 1667294 24849487 ~ 24849604 (-) True XLOC_022369
TCONS_00044126 other downstream 1841595 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044122 other downstream 1934477 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044178 other upstream 153682 26675652 ~ 26675770 (-) True XLOC_022392
TCONS_00044183 other upstream 297144 26819114 ~ 26821768 (-) True XLOC_022395
TCONS_00044197 other upstream 684749 27206719 ~ 27235654 (-) False XLOC_022399
TCONS_00044212 other upstream 1058194 27580164 ~ 27580292 (-) True XLOC_022408
TCONS_00044226 other upstream 1287098 27809068 ~ 27822778 (-) True XLOC_022418

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU19814 True 12322 lncRNA 0.37 2 CI01000001 9790940 ~ 9803333 (+)
rainbow trout (Oncorhynchus mykiss) TU19814 True 279 lncRNA 0.43 1 NC_048565.1 17966635 ~ 17966913 (-)
bowfin (Amia calva) TU19814 True 912 lncRNA 0.42 1 CM030122.1 31475307 ~ 31476218 (+)