RNA id: TU1885244


Basic Information

Item Value
RNA id TU1885244
length 416
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1647611
representative True

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 63615230 ~ 63615645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgtcaaacataacgttttgcattgttgccaaaaagttcaattttggtttcatctgactagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaataacaGTTTCCAGTATCCCTGCGTTGCTTTCAGGTCAATCGCTGGTCTCTCAGACGATCTTTACAGCTGCAAATAATTTGATGACCGTTTTCCTTTTTAaaacaataatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1885237 lncRNA upstream 21732 63592402 ~ 63593498 (+) True G1647604
TU1885207 lncRNA upstream 27458 63585020 ~ 63587772 (+) True G1647583
TU1885226 lncRNA upstream 43315 63571221 ~ 63571915 (+) True G1647594
TU1885222 lncRNA upstream 44889 63568727 ~ 63570341 (+) False G1647593
TU1885245 lncRNA downstream 13 63615658 ~ 63616031 (+) True G1647612
TU1885247 lncRNA downstream 2141 63617786 ~ 63618153 (+) True G1647613
TU1885249 lncRNA downstream 5076 63620721 ~ 63620997 (+) True G1647615
TU1885250 lncRNA downstream 9073 63624718 ~ 63625075 (+) True G1647616
TU1885210 lncRNA downstream 30621 63646266 ~ 63647411 (+) True G1647584
XM_036955363.1 mRNA upstream 49746 63557803 ~ 63565484 (+) True plek2
XM_036955361.1 mRNA upstream 80527 63506786 ~ 63534703 (+) False LOC110498294
XM_036955362.1 mRNA upstream 80527 63506786 ~ 63534703 (+) True LOC110498294
XM_036955360.1 mRNA upstream 115058 63435324 ~ 63500172 (+) False fbln5
XM_036955366.1 mRNA downstream 32724 63648369 ~ 63719010 (+) False LOC110514319
XM_036955367.1 mRNA downstream 32724 63648369 ~ 63719010 (+) True LOC110514319
XM_036955381.1 mRNA downstream 577864 64193509 ~ 64201734 (+) False ccdc177
XM_036955382.1 mRNA downstream 578329 64193974 ~ 64201734 (+) True ccdc177
XM_036955383.1 mRNA downstream 586575 64202220 ~ 64215617 (+) True LOC118941525
TU1885128 other upstream 223398 63391625 ~ 63391832 (+) False LOC110498409
TU1885075 other upstream 411173 63202756 ~ 63204057 (+) False G1647477
TU1884975 other upstream 538087 63075149 ~ 63077143 (+) True G1647411
TU1884898 other upstream 596542 63016955 ~ 63018688 (+) True G1647342
TU1883744 other upstream 1121511 62487001 ~ 62493719 (+) True srsf5a
TU1886125 other downstream 512563 64128208 ~ 64129068 (+) True G1648296
TU1886551 other downstream 1364719 64980364 ~ 64980943 (+) False G1648608
TU1887705 other downstream 1846128 65461773 ~ 65463454 (+) True G1649268
TU1887728 other downstream 1928732 65544377 ~ 65545055 (+) True G1649291
TU1887755 other downstream 1962794 65578439 ~ 65582582 (+) True G1649309

Expression Profile