RNA id: TCONS_00050422


Basic Information

Item Value
RNA id TCONS_00050422
length 1695
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_025597
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 39099716 ~ 39110228 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCTGCTGCGCGCTCCCGTGTGGAGATATCCGTGCCGTCTCCGTCTGAACAGCACAACGCGCTTTGTTCGTGGGATAAACGCCACAAAATGGAAAAGATATACAgAATGGTCTAGCTTGGGCAACTCTAAACTCCAACCAAGCAACTTTCTGACAATCCTCCTCCTAATCACCATCTGTAAAGAATGGAGACGGTGGTGATCGTGGCGATAGGTGTCCTCGCCACCATCTTCTTGGCATCATTTGTGGCGCTGGTGGTTGTGTGTCGCCATCGGTACTGCCACCCTCCAGACTTTCTGCACCAGTTTGACTCCAAGCCTACAGTGGATCTGATTGGAGCGATGGAGACTCAGAGTGAACCATCAGAGCTGGAGCTGGATGATGTTGTCATCACTAATCCTCATATTGAGGCCATGCTGGAGAATGAAGACTGGATTGAAGATGCCTCGGGTCTTGTATCTCACTGCATTGCGATTCTGaagATCTGCCATACCCTCACCGAAAAGCTAGTGGCCATGACAATGGGCTCTGGAGCAAAGGTCAAAGCTCCTGCCAGTCTAAATGACATCATCACTGTTGCCAAACGCATCAGCCCAAGGGTGGACGACGTGGTCCGATCAATGTATCCTCCGCTGGACCCCATTCTTCTGGATGCCAGGGCCACAGCATTACTACTGTCGGTCAGTCACTTGGTTCTGGTGACTCGAAACGCCTGTCACATGTCAGGCAGCCTGGACTGGATCGATCAATCACTGCATGCAGCTGAAGATCACATGGTCGTGCTGAGAGAAGCCGCTTTAGCATCTGAACCAGAGAGATGTTTTCCAGATAGAGAGCAGTCCATCTGAAGCAGcgatactgtatatatacacacacaattttCAAAAACATGAGCAGCACAGGTTTTTTTAGAGGACAGAATGTCTTCTTTTCCTTTCACCTCATCTCTGTTACATAGAGTTTAATGGTTCTCTGTGATCATACTGTCTGATATTTCCTCATGCTGGATTTCTATGTATATAGTAATGGCAAGAAAATGCCTGCAGCAATCAAAACCTTACAATCCAAAGAATAATGCTAGATGGCATTGTTAAGCTATGAAGCTAAACCCTATAGTATACAGTATCAACAAAACAAAGTATATCTTTTCTTCCTTGTGCCTCATATTTGAGTGCAATTGTGTGTATTGTAGCCTGCCTGTGATATGTTTCCAtgcattattattcaattatatatattttcctctaAAAATGCACTACAATTCTAATGTTTCATTTGATAGCAATTCAGCCGATTTAGCAGATCAGTTTGTATATGGGTCAAAGATGAAAGGGGCTTTCAAGcatcaaaataataaaagcacATTATGTACATTAAAATAtggtgcttttttgttttgttaattttaatgagcaaaaaaaaaacataaaaacacctAGAGCAATGTTATTCAGTGTAACAAAATTGCATATCGCAAATATGTTTTCATATTCTGTATTAAAGATgcaagatattggaaaaaactgacatagtttttttgtaatatacATCGTGATATAAATATAACTTTTCAACATGAATTAAGTAACTGTTTTGAAATAATTTATAGTTTTACATTGACTGGAATGATTTTTGCAGGGGAATGTATTATCCAAAAAATACACAAAGTAAAATAAAGCACAGCGATGAATATAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1092 Predicted to be located in endoplasmic reticulum membrane; extracellular region; and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in nanophthalmos. Orthologous to human TMEM98 (transmembrane protein 98).

Ensembl:

ensembl_id ENSDART00000083388

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052364 lncRNA upstream 47006 39050589 ~ 39052710 (+) True XLOC_025596
TCONS_00050419 lncRNA upstream 557828 38540380 ~ 38541888 (+) False XLOC_025594
TCONS_00052745 lncRNA upstream 1344754 37751330 ~ 37754962 (+) False XLOC_025586
TCONS_00050424 lncRNA downstream 148582 39258810 ~ 39264517 (+) False XLOC_025599
TCONS_00050425 lncRNA downstream 149273 39259501 ~ 39264517 (+) False XLOC_025599
TCONS_00050426 lncRNA downstream 149575 39259803 ~ 39264517 (+) False XLOC_025599
TCONS_00050427 lncRNA downstream 149624 39259852 ~ 39264517 (+) True XLOC_025599
TCONS_00050429 lncRNA downstream 445534 39555762 ~ 39564499 (+) True XLOC_025601
TCONS_00050421 mRNA upstream 240411 38793499 ~ 38859305 (+) True XLOC_025595
TCONS_00050417 mRNA upstream 473776 37824268 ~ 38625940 (+) False XLOC_025593
TCONS_00050418 mRNA upstream 474892 37827373 ~ 38624824 (+) True XLOC_025593
TCONS_00050420 mRNA upstream 550965 38540411 ~ 38548751 (+) True XLOC_025594
TCONS_00050416 mRNA upstream 1293433 37790351 ~ 37806283 (+) True XLOC_025592
TCONS_00050428 mRNA downstream 429786 39540014 ~ 39550089 (+) True XLOC_025600
TCONS_00050430 mRNA downstream 456771 39566999 ~ 39576663 (+) False XLOC_025602
TCONS_00050431 mRNA downstream 458062 39568290 ~ 39577052 (+) False XLOC_025602
TCONS_00050433 mRNA downstream 469165 39579393 ~ 39599339 (+) True XLOC_025603
TCONS_00050434 mRNA downstream 490334 39600562 ~ 39607870 (+) False XLOC_025604
TCONS_00050411 other upstream 1310507 37787309 ~ 37789209 (+) True XLOC_025587
TCONS_00050415 other upstream 1310771 37788861 ~ 37788945 (+) True XLOC_025591
TCONS_00050414 other upstream 1311156 37788476 ~ 37788560 (+) True XLOC_025590
TCONS_00050413 other upstream 1311427 37788203 ~ 37788289 (+) True XLOC_025589
TCONS_00050412 other upstream 1311814 37787818 ~ 37787902 (+) True XLOC_025588
TCONS_00050423 other downstream 72518 39182746 ~ 39182862 (+) True XLOC_025598
TCONS_00050432 other downstream 458260 39568488 ~ 39570855 (+) True XLOC_025602
TCONS_00050436 other downstream 490396 39600624 ~ 39606477 (+) True XLOC_025604
TCONS_00050446 other downstream 774591 39884819 ~ 39884956 (+) True XLOC_025609
TCONS_00050449 other downstream 1052171 40162399 ~ 40168381 (+) False XLOC_025611

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000046_04640883_04644188.mRNA True 2646 mRNA 0.35 6 CI01000046 4639233 ~ 4644521 (-)