RNA id: TCONS_00050478


Basic Information

Item Value
RNA id TCONS_00050478
length 970
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_025631
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 41558682 ~ 41632059 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATGTGGTAAATCTCATTTTTCATGTCTTCTAATGAAGCCTCTCTTTTCCAATTGTGCCCACAGAGCCCCCTACAACCCGACGAGCCCGCACCATCTTCTGACCCCAAGTGTAGTCCACGTCTGTCCAGAGCCAGTGTCTTCATCTCTCAGATATTACAGTTTGTCAGCAGGGTGGATAACAAGTACAAGAGGATGAACAGCAGTGAGCGTGTCCGCATTGTCAATGGAGGAAATCCATCATCCGTTTCCAGACCAGGTTTTGAAACACTGAGGCCTGAGGACACGTCTGACCCAGAGAGTGACTTGAACAAGAGCTTGAATCTCATCCCGTACAGTCTAGTGACCCCACACCAATGCCAGCGTAAAAGGCCCATCCTCTTCACCCCTAACATCCTAGCCAAAACCATCGTCCAGAAGTTCCTGAATCTGGGAGGTGCTATGGAGTTCACTTCATGGAAACCAGACATTGTGACAAAAGATGAATTCCTCATGAAACAGAAGATAGAGCCCATCATTTATTCCAAAGAAAAGCAGGCGGGCACGTATGAATGCATCACCCCAGAAAATATAGAAGCCGTTGCCTTCAAGAATAAGCACTGTCTTCTGGAGGCCGATCTGTGCTGTGTGAAAGACCTGCTGAGGAGAGAGATCTTCCCCATCGTCATTTTTATCAAAGTCTGCGAGAgaaacatcagaaaaataaaGCAAGTCAAAAGACTCACTGCATACACTTTTTTCTCTTGCATTTCTCAATACTTAATAGATAGCAATCAAATTGTCCAAACTGTGGATCATTTATTCTTGCTCTGTGGACCTACAGTAAAAGACAATTTGCTTGTTAATGCACAGTTTTGCACATATAAACTCATACGAAACAcatataaagataaataaaacaaacatgaaatTAAGCCAATaaaactagtaaaatattctgAATCTAAAAGAAAATATGAATCCCTCTCATAC

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0050700 CARD domain binding molecular_function

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04662 B cell receptor signaling pathway

ZFIN:

id description
ZDB-GENE-100219-1 Predicted to enable CARD domain binding activity. Predicted to act upstream of or within positive regulation of NF-kappaB transcription factor activity and regulation of apoptotic process. Predicted to be active in cytoplasm. Is expressed in gill; intestine; kidney; spleen; and unfertilized egg. Human ortholog(s) of this gene implicated in diffuse large B-cell lymphoma; immunodeficiency 11A; and immunodeficiency 11B. Orthologous to human CARD11 (caspase recruitment domain family member 11).

Ensembl:

ensembl_id ENSDART00000074647

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052753 lncRNA upstream 552611 41043023 ~ 41066414 (+) True XLOC_025629
TCONS_00052752 lncRNA upstream 670026 40945040 ~ 40948999 (+) True XLOC_025628
TCONS_00052749 lncRNA upstream 716868 40899224 ~ 40902157 (+) False XLOC_025627
TCONS_00052754 lncRNA downstream 325519 41954893 ~ 41962746 (+) True XLOC_025636
TCONS_00050488 lncRNA downstream 564836 42194210 ~ 42206974 (+) False XLOC_025639
TCONS_00050489 lncRNA downstream 574102 42203476 ~ 42206974 (+) True XLOC_025639
TCONS_00052755 lncRNA downstream 861085 42490459 ~ 42493371 (+) False XLOC_025640
TCONS_00052366 lncRNA downstream 861127 42490501 ~ 42497766 (+) True XLOC_025640
TCONS_00050477 mRNA upstream 26097 41585298 ~ 41592928 (+) False XLOC_025631
TCONS_00050472 mRNA upstream 747659 40841897 ~ 40871366 (+) False XLOC_025626
TCONS_00050473 mRNA upstream 748504 40841984 ~ 40870521 (+) False XLOC_025626
TCONS_00050474 mRNA upstream 748504 40856095 ~ 40870521 (+) True XLOC_025626
TCONS_00050470 mRNA upstream 798413 40809011 ~ 40820612 (+) False XLOC_025625
TCONS_00050479 mRNA downstream 18263 41647637 ~ 41706238 (+) True XLOC_025632
TCONS_00050480 mRNA downstream 85592 41714966 ~ 41724932 (+) True XLOC_025633
TCONS_00050481 mRNA downstream 96986 41726360 ~ 41732941 (+) False XLOC_025634
TCONS_00050482 mRNA downstream 102153 41731527 ~ 41732947 (+) True XLOC_025634
TCONS_00050483 mRNA downstream 288125 41917499 ~ 41926869 (+) False XLOC_025635
TCONS_00050475 other upstream 118500 41500409 ~ 41500525 (+) True XLOC_025630
TCONS_00050468 other upstream 824146 40792230 ~ 40794879 (+) True XLOC_025623
TCONS_00050467 other upstream 824185 40791746 ~ 40794840 (+) False XLOC_025623
TCONS_00050466 other upstream 825473 40791746 ~ 40793552 (+) False XLOC_025623
TCONS_00050465 other upstream 826037 40791746 ~ 40792988 (+) False XLOC_025623
TCONS_00050499 other downstream 1744521 43373895 ~ 43384178 (+) False XLOC_025650
TCONS_00050506 other downstream 2085325 43714699 ~ 43714783 (+) True XLOC_025655
TCONS_00050507 other downstream 2087453 43716827 ~ 43716915 (+) True XLOC_025656
TCONS_00050515 other downstream 3258663 44888037 ~ 44888153 (+) True XLOC_025662
TCONS_00050528 other downstream 4005703 45635077 ~ 45635186 (+) True XLOC_025668

Expression Profile

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