RNA id: XM_021579513.2


Basic Information

Item Value
RNA id XM_021579513.2
length 6947
RNA type mRNA
GC content 0.48
exon number 29
gene id LOC110501750
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31089015 ~ 31187398 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACTGATTCTGCTTCCCGTGTTGGTGAGGCTTTACAGTGGAGTGAGTGggagagcgagaacgagagataaagctcttaaattgaattgagagcgagagaggggtagGGCGGAGAATTGAGAGAAGCAAGCTCACTGCCAACTGTGGTAGCGCAATATGGAGTAATCGCGTCCGTTCGAGAACGACGGGAGTAGTTTACAAAGAAAACCCCGCTTTGGATCGACATTACATTAGCAAGGAATAAGATAACAATTTCAATTATGAGATTACGGCATTGCATATAGACAATTGACTTGAAGAGACTAAAATAGACGTTGCAATTTCTATGTATTATTGAAAAATGGCGAACGAGTCTCCAGCTAAAAGTCTAGTGGACATAGACCTTGCCTCTTTGCGGGACCCAGCTGGTATTTTCGAACTGGTGGAAGTGGTCGGCAATGGTACCTATGGACAAGTATACAAGGGCCGACATGTCAAGACAGGACAACTGGCGGCCATCAAGGTCATGGACGTCACAGAGgatgaagaggaggagattaAACTGGAGATTAATATGCTGAAGAAGTACTCCCACCACAGAAACATAGCCACCTACTACGGAGCCTTCATCAAGAAGAGCCCTCCAGGACACGACGACCAGCTATGGCTGGTGATGGAGTTCTGTGGTGCAGGCTCCATCACAGACCTTGTGAAGAACACCAAGGGCAACACACTGAAGGAGGACTGGATCGCCTACATCTCTCGTGAGATCCTCAGGggGTTGGCTCACCTGCACGCCCACCATGTGATCCACCGTGACATCAAGGGCCAGAACGTGCTGCTGACTGAGAACGCAGAGGTCAAACTAGTGGACTTCGGTGTGAGCGCCCAGCTGGACCGGACAGTGGGTAGGAGGAACACCTTCATTGGTACGCCCTATTGGATGGCGCCCGAGGTCATCGCCTGTGACGAGAACCCAGACGCCACCTATGACTACAGAAGTGACTTGTGGTCCACTGGAATCACAGCTATAGAGATGGCTGAGGGAGCTCCTCCGCTGTGCGATATGCATCCAATGAGAGCTCTCTTCCTCATCCCCAGAAACCCTCCTCCTCGACTCAAGTCAAAGAAATGGTCTAAGAAGTTTTGCAGCTTCATCGAGGGCTCCCTGGTGAAGAACTACACTCAGCGCCCCCCCACCGACCAGCTGCTGAAACACCCCTTCATCAGAGACCAGCCCAACGAGAGGCAGGTCCGCATCCAGCTCAAAGACCACATCGACCGCACCaagaagaagaggggggagaaggATGAAACCGAGTATGAGTACAGcgggagtgaggaagaggaggaggaagctcAGGAGCAGGAGGGGGAGCCCAGCTCCATAGTGAACCAACCAGGGGAGTCAACCCTGCGTAGGGATTTCATCCGTCTGCAGCAAGAGAACAAGGAGCGCTCAGAGGCCCTGCGCAGACAGCAGCTCTTGCAGGAGCAGCAGCTCCGGGAGCAGGAGGAGTACAAGCGCCAACTACTGGCAGAGAGGCAGAAACGCATCGAGCAGCAgaaggagcagaggaggaggctggaggagCAACAACGTCGTGAGCGGGAGATGAGGAGGCAGCAGGAGCGCGAGCAGCGTCGCCGGGAGCAGGATGACAAGAGGCGCATGGAAGAGGTTGAACGCCGgcgtaaagaggaggaggagcgcaggagggctgaggaggagaaaaggagggcTGATCGGGAGCAGGAGTACATCCGTCGCCAgctggaggaggagcagaggcaCCTGGAGATCCTGCAGCAGCAGCTGCTCCATGAACAGGCCATGCTACTGGTGAGACCGAACTCTgCTGATGAGAGGTACCGTAAGAACATCCAAGGTTCTCCTCAGGCCGCCCAGGTTAAGGTTCAGCCCCCGGTTCCTCCCCGCGCCGCCGAGACCATCGCCAATGGAAACACCCCCATTGCTGTCCAGCCTGCCATGCAAAGGCCCATGGAACCCCAGGTTCCTGTGAGGACAACGTCCAGGTCTCCAGTACTGTCACGCAGGGACTCTCCTCTACATGGCAACTCCAATGCCACGCCTAACAACCCGGCGGGCCAGAGGAACGCCTGCAGTGCTGCAGCAGAGCCGCGTCTGCTGTGGGAGCGGGTGGAGAAACTGGTTCCCAGGCCAACGAGTGGCAGTGGTAGTACTTGCAGCTCCTCCGGCTCCAGTAACTCAAGCTCCCAGCCCAGCTCTCACAGTGGCTCAGGGGAGAGGTTCAGAGCCCGCTCCTCATCAAAGTCTGAGGGTTCTCCCCTCCAGCATcaagagcatgctgggaaaaaaCCTGAGGAGAGGAAGGAGTCTGTCAGAACTAACCGACTGGCGGACCTGACCGCGCTGGCCAAAGAGCTGCGTGTGGTGGAGGACGTGCAACGCCCCCACAAGGTGACAGACTACTCCTCATCTAGTGAGGAGTCGGGGACCacggatgaggatgaggatgatgaagaggtagaccaggagggaggagaggagtctaCCTCAGGACCAGAGGACTCTCACGCTGTCTCCTCCAGACTAAgcaacggagagatggaatcggTGAAGACCTTGATCGTTCACGTCGAGGGCGAGAGTGACTCTAAAACCACACCCTGTAAAGATGACACTCTGATCGTCAGACCGAGTCATTCTGTCAGCAACACAATGCAGAAACAcaagtcctcctcctccttcactcctTTTATCGATCCACGCCTCCTCCAGGTCTCTACATCCGGCGCAGCTCTCAACAACCTGGCTTTTGGGAACGACGCCAGGCTGGCGGAGGCACTGAGGGCGGACCCGTCACGTAAAGGCTCCGTGGTCAATGTGAACCCTGTCAACACACGGCCGCAGAGTGACACCCCAGAGATCCGCAAGTACAAGAAGAGGTTCAACTCTGAGATCCTGTGTGCTGCGCTCTGGGGAGTGAACCTGCTGGTGGGGACAGAGAGTGGTCTGATGCTGCTAGATCGTAGCGGTCAGGGGAAGGTGTATCCCCTCATCAGCCGACGCCGCTTCCAACAAATGGATGTCCTAGAGGGACTCAACGTCCTGGTTACTATATCAGGCAAGAAGAACAAGTTGCGTGTGTACTATCTGTCCTGGTTGAGGAACAAGATCCTGCACAACGACCCTGAGGTGGAGAAGAAGCAGGGCTGGGTCACTGTGGGTGACCTGGAGGGTGCTGTTCACTACAAAGTTGTGAAATACGAGAGGATCAAGTTTTTGGTTTTGGCCCTGAAGAACTCGGTGGAGGTCTATGCATGGGCACCGAAACCCTACCACAAGTTCATGGCTTTCAAGTCGTTTGGTGACCTGGTGCACAAGCCCCTGCTGGTTGACCTGACGGTGGAGGAGGGTCAGAGGTTAAAGGTAATCTATGGCTCCAGTAACGGATTTCATGCTGTGGACGTGGACTCAGGGGCCGTCTACGACATCTACCTGCCCACCCATatcCAGACCAGTATCCAGTCCCATGCCATCATCATCCTGCCCAACACAGATGGCATTGAGCTGCTGGTGTGTTACGAGGACGAGGGTGTCTATGTCAACACCTACGGACGCATCACCAAGGACGTGGTGCTGCAGTGGGGCGAGATGCCCACTTCTGTGGcCTATATCCGTTCTAACCAGATAATGGGCTGGGGGGAGAAAGCCATAGAGATCAGATCTGTGGAGACTGGACATCTCGACGGAGTCTTCATGCACAAGAGAGCCCAGAGACTCAAGTTCCTGTGTGAGAGGAACGACAAGGTGTTCTTTGCCTCGGTGCGATCCGGAGGAGCCAGCCAGGTGTACTTTATGACCCTGGGGCGCACCTCTCTGCTCAGCTGGTAGAGAGACTACACCCCCTCTACACTGGAAACCAACCAACCACGTTTTACCCGACGTTCAACGATGCCATCGGTCAAAAGCCAACCACCTCCGACATAATCATGACCTTCGACCCGGGGCATCGTGCTATATTGAGGATACACAACATCTTGTTTTTTTctcccacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggcagaTGACGTCGCCCCAGCCGTGAATACCAGATATgagaattgtaaaaaaaaaatgaagttaATTGattataaatcaaataaaaaaatgtgaagAAAGGGGGTGAACAGTTTGCCCCACTTTGGTGCTCAACAGGTTGTGGACACACGTCTGTGCGGGGCTGTTGCCCtgaaggcgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtcgttcctAGTTCCCCTCCCCTTCCTTTCCTTAGCGAAGGAGGGGCAGGGGGCGGAGCATACAGTGTTAATGCTACAGTAGTGTATGTCAATGTCTTTCTGTTTGGTCCAATGATTGCTGactgcgggggggggggataaagaaGCTGTGCAAGGGAGCCAATTGGTCCTAGGCTCAATGCTGTCATGACACAGTGTGTGGGAAGGGCCTATGCATTTTACCGTAAGTCTGTTATCTGAGAGGACTCAGCTGGAGTGTGTTGATAGTTAGGACAGCTACCGTATTTTAATGTGCAAGTTCATGTAAAAACATTTGAACCAGATGGACtttgaaatagtgttttttattttattatgatTCCCTAAAAAAAAGTAAGTATTTGGAGttaatatttattttaccttgGTTTTAAAAATCACAATGCACATAGCCTCCAGTTTTCTTTGCTTTTATTTCAACCCACAACACATTCAAATGCTTTGAGTCAGAGAGTGGTTGGGTAGAACATTTAAATAGTATCTATGTATAATAAATATTAATTTAATATCATTCATAGTTTCAATCGTCATGTTAGTGGAATCCTCAGTCCAACATGACGCTGTGATCCGGCTTGTACCATCAGAGTCCAGGATGGAGGACATGGTCCTGATGTGAATAGACAGATATAATaaaagagagtggaggagaaggttcaggtcatatacagtatgtgtgtggtaGTAAAGGGGCCaatagatgagagaggaggggtgtcaatgtaagTTTTTGTAGCAGGAAGGTTACACATGGTCAGCAAACCTCAATGGACTCATAGACTGTGGATGGAAATAATGGTGgtgttttattgttgtttttcATTAGTATCTTTTTAGGAATGCAATGCACTAAGTGTCAAGAATGTAGAAAGAAATATACTGTGTGGTGGTCAAAGGCATGAGAATTTTATTTTTGTTCCTTGTCACAAGTGATCAATTTCAAGTTGACACAAGTGAATATTAAACAATGGAGGCTCTAAGGAAGATGTCGGTTTTTGGGGCAATTCTGAATCGTTTCTGAGACTAGGTTGTGACTCCTTTCACAAACTCAATGTTTTAAAGTGAATCGGGGCTTAAGCGTTAACAGCTCTGAGTTGAGAAGTTGCTAGGCTACAGTAGTTTCCTGTGGGGCCAGTTTGCTCACAGTAGCTAAATCAACCAGATGCGCTAACAGGGCTTTAGACCTCAGTGTTTAACTCTAAAAAAACATTGCCAGGCTCAATAAAGAAGTCTTGAGCTCTACTTCTTGTCCTTCTCGTGTGATGTGTCAGCTTGTTAATGGAAGGCAAATCAAAACAACTGTTTCAAatcagaggagagcagagtaggTGTGACATCTGTGATTCTACAGCTCTCTGAAGGTGTTCACCACAGAAACCCACTTTGGGAAGATTCTCTTTTGTTGTTGTTCACTGTTAAAGGGTATAGTCTGTACATCTGAAGACTATTCAATACACTGCAATATTCCCTGCCACGACTCTCTCACGACAGGGTATCTGACCTGCCTAAACCATGGTGACAAACAACATTTAATATTATTTTCCTGAGTAGGATTACCCTACTTTTCCCAAGGAACACAACTGTGGTTTAATGGTGATGATGGATCAAAGCTATTTCACCCAAGGGGACAGATTTTCTACCCGAACTGTGTGTCAGACTCCATAGTGGGTCAATCATTCTCTGAGTTGAGTCTTTCTCCTACTAACAGTCATGCCATTCATTGTGTGTAGAGCTGTGGGAAAGGCACTGCAAATTATACATCACAGAATTGTTTCACAAGCCAACCTTTTTTATATATGGAAAAAGAAACCTGTTTGAAAAGCGAACCCCaatgctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaatagcccccccccccagcactgtCCCACTATGTCTTTTTGGTTACATCAAGGCCTTCATGAGTGGCATAAGTGAGTTTATTAAGGTTATGGTTATTGATATTCTATTAATGGAAAGACGGACAACAATTTCTTCGCAATCTGAAAAGCAGTCACTTGCTGATTTTATGTTTTATAAAAGTGCCAATATGGCAACATTAAAAGTGTAAAAAGAATGACGAAACCACTATGTTGATAAATATACTTTTTTAAGATCTCACTTGAAGCATTAAGTTTTAGACTTAGTTAAGAAGCTTAACAATAGTTTATGTACTTTGCAGTGGTTGAATATTATAACGCTCATGTTAGGTTGAGAAAATGGCAATGTTTACAGAGGCAATGTTTTGTTACACTAATGTGTATCATGATATTAGTTTTTTTTAGCTTGTTTTATATTGAACATGATTGATCAATAATCCTAAATTATGccattttttagtttttttttctcaaacAACTCAAAACACAATAAAGAATACACATGCCACATTTGATTTTCCAGATGATCCCATAATGTCGTTCCCAGCATTGTGGGGACATTGTAGTGACAAAGTCCGTTCCTTGCCGGCTTGGATGTCAGTCAGGCTTGGGTGTTTTTCTCCAGTGTTTCTTCCATGCTACTCTAACTTATGTGCTCTCTGTGTATGACAGGAAGTCTTGTATTTTCCTGAAGGTCTTTTCTCTTTGAATAAACTCTAAAGTAATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058156 lncRNA upstream 47304 31042748 ~ 31042973 (+) True G1798490
TU2058155 lncRNA upstream 47592 31042478 ~ 31042685 (+) True G1798489
TU2058132 lncRNA upstream 56082 31033941 ~ 31034195 (+) True G1798475
TU2058131 lncRNA upstream 57042 31032879 ~ 31033235 (+) True G1798474
TU2058130 lncRNA upstream 58282 31031741 ~ 31031995 (+) True G1798473
TU2058216 lncRNA downstream 3039 31190437 ~ 31190737 (+) True G1798549
TU2058217 lncRNA downstream 3393 31190791 ~ 31191144 (+) True G1798550
TU2058218 lncRNA downstream 4421 31191819 ~ 31192287 (+) True G1798551
TU2058266 lncRNA downstream 96693 31284091 ~ 31289666 (+) True G1798596
TU2058271 lncRNA downstream 102597 31289995 ~ 31291207 (+) True G1798600
XM_021579505.2 mRNA upstream 15987 31067493 ~ 31074290 (+) True LOC110501749
XM_021579502.2 mRNA upstream 50646 31037126 ~ 31039631 (+) True LOC110501747
XM_021578580.2 mRNA upstream 86634 30999817 ~ 31003643 (+) False rl31
XM_036959111.1 mRNA downstream 18990 31206388 ~ 31237363 (+) True LOC110502091
XM_021579518.2 mRNA downstream 62209 31249607 ~ 31267129 (+) False dnajc10
XM_021579520.2 mRNA downstream 62224 31249622 ~ 31267129 (+) False dnajc10
XM_021579519.2 mRNA downstream 62241 31249639 ~ 31267129 (+) True dnajc10
XM_036959603.1 mRNA downstream 177144 31364542 ~ 31366811 (+) True LOC110501756
TU2058046 other upstream 199210 30888661 ~ 30891067 (+) False G1798397
TU2058047 other upstream 199210 30888661 ~ 30891067 (+) False G1798397
TU2058048 other upstream 199210 30888661 ~ 30891067 (+) False G1798397
TU2058049 other upstream 199210 30888661 ~ 30891067 (+) True G1798397
TU2057803 other upstream 544323 30500656 ~ 30545954 (+) True G1798168
TU2058247 other downstream 59083 31246481 ~ 31292205 (+) True G1798579
TU2058268 other downstream 106154 31293552 ~ 31297419 (+) True G1798597
TU2059894 other downstream 1180238 32367636 ~ 32374181 (+) True LOC110501767
TU2060607 other downstream 1723395 32910793 ~ 32914182 (+) True G1800754
TU2064746 other downstream 4553041 35740439 ~ 35759426 (+) False LOC110501795

Expression Profile