RNA id: TCONS_00051523


Basic Information

Item Value
RNA id TCONS_00051523
length 1527
RNA type mRNA
GC content 0.54
exon number 11
gene id XLOC_026437
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 30515365 ~ 30625219 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGGGGGACTGGGATGACGACATTTGTAAGAGGGCCATGGTGCTGGTGGAGGAACTGTGCTTTCGGTCTGGAGGCCTCAGCCAGAGCGCGAGCTGCCAAGAGTTCAGCTACATGATGAGAGGACCTAACAGACAGATAAACACAGaGATCTCTGTGAGTCTGCTCTCCGTCATCGTAACTTTCTGTGGCATCGTGctgctctctgtctctctcttcgTCTCCTGGAAGCTATGCTGGTTGCCTTGGAGAGATAAGGAAGGGGGTGCCTCGCTCCTTCCTCCCCTTTTACAGAGGAAAGATACTCACTCTTCTTCCTCGTTGTATCCCACGCTGTCCCAGCAGGGTCAGCATCACCCCCATTTCTCCGACGTGATGGGGGTCGAGGGGGGTGTGGTTGGGGGTCCGCAGGAGATGCAGGAGCACTCCTACCTGGACATGGACTCTTATCCCAACAATGCTGCAACTCTTAAGTTAAGCCAGACATCGCCCGAGTTGCCCCCGGCAACAGAAGGAGGCTCAGCTGCGAAAGACCTGCCCAATGCCCACTCCCAGCAGCAGGTCACCACCAGGTCACCCATGACTCACCAGCTCTCCAGCCCTGATTTCCATGGTGAGGAGAAGAGCGAGCAGTTGACCAGCATTGGGCAGATCAAGCCAGAACTTTACCGCCTGCGCCAAGGAGACCAGGGGGACGGCAAACAAGGCAACAACTGTGGCAAAATCAGCTTCCTCTTGCGATACGCCTTCAACACGGAGCAGCTGGTGGTTAAGATCCTGAAAGCCCTGGACCTCCCGGCGAAGGATGCCAATGGTTTCTCCGATCCCTATGTCAAGATCTACTTACTGCCTGATAGGAAGAAGAAATTTCAGACCAAGGTGCACAGAAAAACTCTCAACCCGGTCTTTAATGAGACGTTCCAGTTCGGCGTGCCCCTGGCTGAGCTGCACGCGCGCAAGCTCCACTTCTCCGTCTACGACTTTGACCGCTTTTCCAGACACGACCTCATAGGTCAAGTGGTAGTGGATAACCTGCTGGACTTCAGCGAGGGAACTGGGGAGAAGCCTATTTGGAGAGACATTGTGGAAGGAACGGCGGAGAAAGCTGACCTGGGAGAGCTGAACTTCTCACTGTGTTACCTGCCAACAGCTGGCCGACTGACCGTCACCATCATTAAGGCCACCAATCTGAAAGCCATGGACCTGACGGGCTTCTCAGATCCATACGTAAAGGCATCTTTGGTTTGTGAAGGTCGAAGGCTGAAAAAGAGAAAGACATCCATAAAGAAGAATACCCTCAATCCCACGTATAACGAGGCTCTGGTCTTTGATATTCCCAACGAGAACATTGAGAGTGTGTCGCTCATCATAGCCGTCATGGACTACGACTGtATCGGTCATAATGAGGTGATCGGGATGTGCCGTATGGGCAGTGATGCTGATGGGCCGGGAAGAGAGCACTGGACAGCCATGCTGGCGAATCCCCGCAAGCCTATTGAACACTGGCACCAGCTGGTGGAGGTATAA

Function

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0048791 calcium ion-regulated exocytosis of neurotransmitter biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0014059 regulation of dopamine secretion biological_process
GO:0005886 plasma membrane cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0001786 phosphatidylserine binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0030276 clathrin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-090601-1 Predicted to enable several functions, including calcium ion binding activity; phospholipid binding activity; and syntaxin binding activity. Predicted to be involved in calcium-ion regulated exocytosis; cellular response to calcium ion; and regulation of secretion by cell. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYT3 (synaptotagmin 3).

Ensembl:

ensembl_id ENSDART00000110597

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00051515 lncRNA downstream 281368 30247749 ~ 30248259 (-) True XLOC_026434
TCONS_00053049 lncRNA downstream 327796 30199036 ~ 30201831 (-) True XLOC_026432
TCONS_00053048 lncRNA downstream 490478 30036697 ~ 30039149 (-) True XLOC_026427
TCONS_00053047 lncRNA downstream 506142 30019836 ~ 30023485 (-) False XLOC_026426
TCONS_00051527 lncRNA upstream 60846 30670505 ~ 30676028 (-) True XLOC_026438
TCONS_00053050 lncRNA upstream 85218 30694877 ~ 30696290 (-) True XLOC_026439
TCONS_00053051 lncRNA upstream 432293 31041952 ~ 31058290 (-) True XLOC_026446
TCONS_00051546 lncRNA upstream 471021 31080680 ~ 31082367 (-) False XLOC_026449
TCONS_00053052 lncRNA upstream 483553 31093212 ~ 31093764 (-) True XLOC_026450
TCONS_00051521 mRNA downstream 41527 30484348 ~ 30488100 (-) True XLOC_026436
TCONS_00051519 mRNA downstream 41564 30454353 ~ 30488063 (-) False XLOC_026436
TCONS_00051517 mRNA downstream 95611 30370708 ~ 30434016 (-) False XLOC_026435
TCONS_00051516 mRNA downstream 141102 30369765 ~ 30388525 (-) False XLOC_026435
TCONS_00051526 mRNA upstream 55536 30665195 ~ 30685401 (-) False XLOC_026438
TCONS_00051528 mRNA upstream 104452 30714111 ~ 30861177 (-) True XLOC_026440
TCONS_00051530 mRNA upstream 258667 30868326 ~ 30885250 (-) False XLOC_026442
TCONS_00051531 mRNA upstream 263426 30873085 ~ 30888415 (-) False XLOC_026442
TCONS_00051532 mRNA upstream 278467 30888126 ~ 30909487 (-) True XLOC_026442
TCONS_00051520 other downstream 41533 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 659503 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 660895 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 662087 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051474 other downstream 759369 29770142 ~ 29770258 (-) True XLOC_026414
TCONS_00051529 other upstream 190882 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051585 other upstream 1576475 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 2363315 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 2814533 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 3339010 33948669 ~ 33948788 (-) True XLOC_026513

Expression Profile

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