RNA id: TCONS_00051570


Basic Information

Item Value
RNA id TCONS_00051570
length 866
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_026465
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 31850851 ~ 31875138 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGAGCTAGGTGGGGGGAAAACACGTCGAGCTCTGTCGGGTGATCAGTGTGTGCTGGTACATTTCATTCAGCTCAGCCTGCAGAAGTTCCCCGTGTGGACCAGCGGACAAAACGAATGAGATTTCAGCCGACTCGTGCACAGTGAGCGGACCGGAACCGGCAGCAGATCTCTCTCATCCCCTTTCTCTTGAACAGGCTGATAAGGAGACCCAGATGgACAACAGGAACACGTCGGATGAAAAGCCTGTTCAACGATCTAAGTCCTTCAGTTTCAAGACCCAAAAGGAGACGTGTGCATCATGTGAGAAGACTGTGTATCCCATGGAGAGATTGGTGGCCAACAATCTCATCTTTCACGCCGCGTGCTTCTGCTGCAAGCACTGCAACACCAAACTCAGTCTGGGCTCTTACGCAGCTCTGCAGGGCGAGTTTTACTGCAAACCACACTTCCAGCAGCTCTTCAAGAGCAAAGGCAACTACGACGAGGGCTTCGGACGCAAGCAGCACAAGGAGCTCTGGGCCTCTAAGGATGCTGAGAGCATCGGCAAGACGGCATAATCCTCAATGATTTCCAAAGCTCACCTTTCACCTCCACTGGCCAATCATgacccttcacacacacacacacacattcacacttacACAAGCAGTTGAGCCAGATATACCACCCCCTGATAGGGTTGATCAACTTcccttttgtgtttttgttttcccgCTCCCCGCTCAATTTTAAGTTCTGTTTTATTTAGCCTTGTTACgttttttgttcattgttttttccGTCTAGTGTCGTGAAGTTAGTTGATTGTGACCAAAATTGTTGTGTCCCATATTGGTGGGATGATTCACTTGTTAAGATCCTGTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120906-1 Predicted to enable metal ion binding activity. Orthologous to human LIMD2 (LIM domain containing 2).

Ensembl:

ensembl_id ENSDART00000155298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053054 lncRNA downstream 200140 31650253 ~ 31650711 (-) True XLOC_026460
TCONS_00052472 lncRNA downstream 250569 31511470 ~ 31600282 (-) False XLOC_026457
TCONS_00052473 lncRNA downstream 250569 31511774 ~ 31600282 (-) False XLOC_026457
TCONS_00052474 lncRNA downstream 333534 31516690 ~ 31517317 (-) True XLOC_026457
TCONS_00053053 lncRNA downstream 673642 31174133 ~ 31177209 (-) True XLOC_026453
TCONS_00053055 lncRNA upstream 1710 31876848 ~ 32055378 (-) True XLOC_026466
TCONS_00051573 lncRNA upstream 14458 31889596 ~ 31891825 (-) True XLOC_026467
TCONS_00051575 lncRNA upstream 47355 31922493 ~ 31924586 (-) True XLOC_026468
TCONS_00053056 lncRNA upstream 60559 31935697 ~ 31957366 (-) False XLOC_026469
TCONS_00053057 lncRNA upstream 76171 31951309 ~ 31952513 (-) False XLOC_026469
TCONS_00051567 mRNA downstream 5035 31815184 ~ 31845816 (-) False XLOC_026464
TCONS_00051569 mRNA downstream 17585 31816814 ~ 31833266 (-) False XLOC_026464
TCONS_00051568 mRNA downstream 17585 31816814 ~ 31833266 (-) True XLOC_026464
TCONS_00051566 mRNA downstream 46370 31792441 ~ 31804481 (-) True XLOC_026463
TCONS_00051564 mRNA downstream 66769 31728871 ~ 31784082 (-) False XLOC_026462
TCONS_00051571 mRNA upstream 634 31875772 ~ 31879201 (-) False XLOC_026466
TCONS_00051572 mRNA upstream 4304 31879442 ~ 31893008 (-) False XLOC_026467
TCONS_00051574 mRNA upstream 43904 31919042 ~ 31924643 (-) False XLOC_026468
TCONS_00051576 mRNA upstream 191845 32066983 ~ 32071468 (-) True XLOC_026470
TCONS_00051577 mRNA upstream 199668 32074806 ~ 32079916 (-) True XLOC_026471
TCONS_00051529 other downstream 1050193 30800541 ~ 30800658 (-) True XLOC_026441
TCONS_00051520 other downstream 1362757 30454353 ~ 30488094 (-) False XLOC_026436
TCONS_00051482 other downstream 1980727 29868899 ~ 29870124 (-) True XLOC_026416
TCONS_00051481 other downstream 1982119 29868635 ~ 29868732 (-) True XLOC_026418
TCONS_00051479 other downstream 1983311 29867404 ~ 29867540 (-) True XLOC_026417
TCONS_00051585 other upstream 310996 32186134 ~ 32187385 (-) False XLOC_026474
TCONS_00051635 other upstream 1097836 32972974 ~ 32973534 (-) True XLOC_026495
TCONS_00051656 other upstream 1549054 33424192 ~ 33424328 (-) True XLOC_026505
TCONS_00051678 other upstream 2073531 33948669 ~ 33948788 (-) True XLOC_026513
TCONS_00051702 other upstream 2148027 34023165 ~ 34023613 (-) True XLOC_026529

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU312851 True 226 TUCP 0.38 1 CI01000069 3426149 ~ 3426374 (-)
rainbow trout (Oncorhynchus mykiss) TU1349434 True 4160 TUCP 0.42 5 NC_048577.1 49486926 ~ 49504010 (-)
striped catfish (Pangasianodon hypophthalmus) TU242673 False 4305 TUCP 0.41 5 NC_047607.1 3966758 ~ 3986284 (+)
bowfin (Amia calva) TU20442 False 1995 TUCP 0.42 5 CM030122.1 33488725 ~ 33513579 (-)