RNA id: TCONS_00053822


Basic Information

Item Value
RNA id TCONS_00053822
length 2342
RNA type mRNA
GC content 0.37
exon number 10
gene id XLOC_027355
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 25691642 ~ 25704064 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttatttctcccTAGGACTGTGAGCACCGCGAATAGGACAAGTCCTTTGTTGACTGTTCAGCCTCGTCGAGGACTGGTTGACGAGAAGTTTCAAATTGTCATAACAAATTTACTGCCAAATCAAGAGGTAACGCTGCACTCTCTACATCAGTCTGAAGATAAGGACTTCTGGGAGGCTTTTGGACACTATATCAGTGATGAACATGGAACAGTGACAGTGGCAAAAGATGAAAGTTTGGGAGGTACATATGAAGGCACAGAGCAGATGGGTTTGCTGTGGAGCCTGAGGCCTGTACCAGGAAGTCGATCAGCTCTCAGGTTGCGCAAGACAAATGTACTCACACCGATGGTAGTTAACATTTCAGTCTACAATGGGCATCTGTCTCAAGGATTCAGTAAGACCTCAGTGCTGGCCACAACTGTCACAGAGCGCTGGTACATGGCACCAGGTGTCCAAAGGGTGAACATAAGAGAGAATGGAGTTCGAGGAACTTTATTTCTACccccaggtCCTGGGCCATACCCAGGTGTGCTGGACCTATGGGGAGGAGGTGGCGGTTTGGTTGAATATCGTTCTGCCTTGCTTGCATCTCATGGCTTTGCATCCATGGCACTTGAATACCTTTCTCCTGATGAGTTGAGAACGGCTGATGTTGATGTCTCATATTTTGAGAATGCATACCAGATACTGCAAAATCATCCAAAGGTACAGAAGAACAAGATGGCGATGCTTGGGTTGTCTTTTGGAAGTGCCATCACATTCAGTATGGCTGCCTACTCCACGATCATAAAGCCCCAGTGCTGTGTGTGTATCAGTGGAAGTCATGTGGTTCCTGTTGATAAATCCCTCTTTGAAGTCTTTGAGGAGATAAAAAAAAATATGGATAAGGTACATGTGAATGAGGATAACCATGTAATACAAAGAGGCATGATCCTGCCGATTCCCTCAGACCCGGCTCAGAAAATCGACGTTGGGAGAATAAAGTGTCCTGTTATGTTGGTGAATGGTGGTGATGATCAGAACTGGGCTTCTGTTGAATCTGCTCAAGATATGGAGATGATGATGGAGAAGGCAGGAAATCGACACCTGCTGACGGTCTTGACGTATCCTGATGCTGGTCATCTGATTGAACCTCCATACACACCTCACTTCAGAGCAACTAACTTCATCCTACAAGAAATGAAGGAGAAAATTGTCATGCTGTGGGGTGGACAGACTAAACCACATGCATATGCTCAAGAGGACTCATGGGAGAAGATTTTAGCATTTTTCCATCAGCACCTATACAGTTCAAACATTAGGGCCAAACTGTAGTTCTTTCATTTGAAACTGATATAAAAGAGCAAGTTCATTTCAAATGCCTTTAATTGCAATGATTATGCAGCCAGCACTTGATGTTACATTTCACTTTGCTATCTGTATTGAATAAAAGAGgatcttaaatatattttatataatgcaCTTATATTAGACATATCCCATTAtgcaataattataatatttacataCTATAGAAAATGCATCATTACTAAATATTACCACTAAAGGGATTAGTATTGATATTAGCTGGGaaagacacacacaaaatgtAACTGTGATGAACACTACATTTCCTTCACTTTGTACCCACAAACTATCTCTATAAGAATGCTTGGGGGGATGTTTTAGATTTCattatctaatttatttttacttgattAACAAGAAATAATGTCTAtttctaaagtttttttaaaccaattaCTGTATGTGTGCTAGCCAGAAGATGGTAAAATATTTGGGTGTATTTGCAATAcctgcaaaacaaaaaaagtatgttttatttgttttagcagCGAATATCTGAATAATTTGCATGTACATACAGAGATATTGCATAATGGTATTTTTTGGATGTAATTAACTCTTGTGTTGTTGCCATGTCTAATTTAATGTTTTACACAGATCAGTCATGAATATTaaacattctaaaaacaaaaagctACAGTTGTTTTTActctattaaaaaaaagtcactatGTAACTATATATGTTTGGTCAAATAATAAAATGGCAATCACACTAAGACATGGGGCAATGTTAATttacacaatttattttttatttttaaatgatgtaaagatgttttatttattaatcatgtaTGTATTAAGTAAATAAAGTCTATTACAGATTATTTAATTATAAGTGTTGTAATTATAAGTGTTGTTGTTAATAGCATAGTACattggttttaaaaagttttgtagTTAAAAGCTAACTACATTGCCAATCATAAGTCTGTTGGACAAAAGTTTCCCTCGATTATTTGcacaagaaaacaaaataaagttatcTTTTAC

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0006637 acyl-CoA metabolic process biological_process
GO:0047617 acyl-CoA hydrolase activity molecular_function
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-254 Predicted to enable acyl-CoA hydrolase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Is expressed in digestive system.

Ensembl:

ensembl_id ENSDART00000132864

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057735 lncRNA upstream 603616 25084095 ~ 25089847 (+) True XLOC_027345
TCONS_00057153 lncRNA upstream 677195 25014049 ~ 25016268 (+) True XLOC_027344
TCONS_00057152 lncRNA upstream 934682 24758348 ~ 24758781 (+) True XLOC_027343
TCONS_00057734 lncRNA upstream 1804669 23880394 ~ 23888794 (+) True XLOC_027342
TCONS_00057151 lncRNA upstream 1841815 23844584 ~ 23851648 (+) True XLOC_027341
TCONS_00057736 lncRNA downstream 49973 25754037 ~ 25755349 (+) True XLOC_027357
TCONS_00053838 lncRNA downstream 653403 26357467 ~ 26359451 (+) True XLOC_027362
TCONS_00053841 lncRNA downstream 792439 26496503 ~ 26572656 (+) False XLOC_027364
TCONS_00057737 lncRNA downstream 1127191 26831255 ~ 26836675 (+) True XLOC_027366
TCONS_00053854 lncRNA downstream 1396490 27100554 ~ 27108787 (+) True XLOC_027369
TCONS_00053818 mRNA upstream 1956 25678113 ~ 25691507 (+) False XLOC_027354
TCONS_00053819 mRNA upstream 2930 25680480 ~ 25690533 (+) True XLOC_027354
TCONS_00053817 mRNA upstream 26628 25654686 ~ 25666835 (+) True XLOC_027353
TCONS_00053816 mRNA upstream 26900 25651724 ~ 25666563 (+) False XLOC_027353
TCONS_00053815 mRNA upstream 35610 25651720 ~ 25657853 (+) False XLOC_027353
TCONS_00053823 mRNA downstream 515 25704579 ~ 25751361 (+) False XLOC_027356
TCONS_00053824 mRNA downstream 1973 25706037 ~ 25751277 (+) True XLOC_027356
TCONS_00053825 mRNA downstream 208244 25912308 ~ 25946741 (+) False XLOC_027358
TCONS_00053826 mRNA downstream 208365 25912429 ~ 25946931 (+) False XLOC_027358
TCONS_00053827 mRNA downstream 208590 25912654 ~ 25946969 (+) False XLOC_027358
TCONS_00053811 other upstream 83952 25607102 ~ 25609511 (+) False XLOC_027351
TCONS_00053789 other upstream 2314085 23379262 ~ 23379378 (+) True XLOC_027338
TCONS_00053784 other upstream 2558927 23132542 ~ 23134536 (+) False XLOC_027335
TCONS_00053781 other upstream 2560939 23127204 ~ 23132524 (+) False XLOC_027335
TCONS_00053842 other downstream 866634 26570698 ~ 26570813 (+) True XLOC_027365
TCONS_00053851 other downstream 1396464 27100528 ~ 27106507 (+) False XLOC_027369
TCONS_00053853 other downstream 1396490 27100554 ~ 27105396 (+) False XLOC_027369
TCONS_00053858 other downstream 2411543 28115607 ~ 28115721 (+) True XLOC_027372
TCONS_00053865 other downstream 2680373 28384437 ~ 28407131 (+) True XLOC_027375

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000019_01397591_01406229.mRNA True 1637 mRNA 0.45 10 CI01000019 1397467 ~ 1406422 (-)