RNA id: XM_036964772.1


Basic Information

Item Value
RNA id XM_036964772.1
length 3514
RNA type mRNA
GC content 0.53
exon number 25
gene id LOC110507225
representative False

Chromosome Information

Item Value
chromosome id NC_048591.1
NCBI id CM023245.2
chromosome length 51556237
location 40692403 ~ 40840064 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGTTGGTGGCGGTAGGGTCTTGCTCGGGACAGTTGGGCACTCCCTTCGCTACTAGAGGGGAACAGGATATTATTGATGTGCTTCATGACATGGAAGACAGGAACCTGAAGGAATAATATTGTGTTCAATAGATGTTAATATTTTATTAGAAGTTGATTCTGGTAAAATCGGACTAACGCATCCCATTGCACCCTCCATCATCCACCCATCATGAGTTCCTGGGTTGTGAACAGGAAAGGAGGGCTGCGATACTGCCACCACTTCCTCACAGACAACAGCATCTTTCATGtggAGCGATGTATGAGTGCCATGCAGTCGGGGACACAGATGGTGAAGTTGAAGGCTGGTTCCAAGGGGCTGGTGAGACTGTTCTACCTGGACGAACATCGCTCATGCATCCGATGGAGACCCTCACGCAAGAGCGAGAAGGCCAAGATCACTATTGATTCGCTGTACAAGGTGACGGAGGGCCGTCAGTCAGACATCTTCCACCGCCATGCGGAGAACAGTTTCGACCCGGCCTGCTGTTTCACCGTTTATCATGGCAACCACATGGAGTCCCTAGACCTGGTGACCTCTAACCCTGAGGAGGCTCGGACCTGGGTGACAGGACTACAATACCTGATGGCTGGCATCAGTGACGAGGACTCACTGGCCAAACGACAACGCACCCACGACCAGTGGATGAAGCAGACGTTTGAGGAGGCTGATAAGAACGGGGATGGTTTGTTGAACATGGAGGAGATCTACCAGCTACTGCACAAGATGAACGTCAACCTGCCCCGCAGGAAGGTCAAACACATGTTCCAGGAAGCGGACTCGGATGACCAACAGGGCACGTTGACATTTGAGGAGTTCAGTGTGTTTTATAAGATGATGTCTCTCCGGCGGGACCTGTATCTGCTGCTCATGGGATACAGTGACAGGAAGGACCACCTGACTGCCGACGAGCTGGCCAACTTCCTGCTCAACGAACAGAAGatggTGAATGTGACTACAGAGTACTGTCTGGATGTCATTGAAAAGTTTGAGCTGTCTGAAGAGAACAAACAGAAAGGCATTCTGGGAATTGAGGGTTTCACCAGTTTCATGCGCAGCCCCACGTGTGATGTGTTTAACCCTGAACACCATGAGGTGAACCAGGACATGGATCAGCCTCTGAGTAGCTACTACATCTCCTCGTCTCATAACACCTACCTAACGGGAGACCAGCTGCTGTCTCACTCCAAGACAGACATGTACGCCTGGGTACTACAGGCTGGCTGCCGCTGTGTGGAGGtGGACTGTTGGGATGGTCCTGATGGAGAGCCCATGGTTCAGCATGGTTACACTCTGACCTCCAAGATCACCTTCAAGTCTGTCATAGAGACCATCGACAAATACGCCTTCATCAGCAACCAGTACCCAGTGATCCTATCCATAGAGAACCATTGTAGCATCCAACAACAGAAGAAGATAGCCCAGCACCTCAGAGAGATCCTGGGAGACAAGCTGGACCTGGGAGAGGCCCTCCGCAGAGACTCTATACAGCTACCCAGCCCCCACTCTCTACAGGGGAAGATACTCatcaagGGGAAGCGTCTCCCTCCCTACCTGTCTGTGGATGTTGAGGAGGGGGAGGTGTCAGATGATGACGACAGTGCTGATGAGATTGACGACAACTTTAAACTAAAGAACAGCAATaGTAATGGTAACCACCAAGTGGAAAGTTACATCAGGAAGAAGCTGGACTCTCTGTTGAAGGAGGCTCAGATTGGAGACAAGGAGGACACAGACAGCTCCAGCATCAGAGCCCTGCTCAGAGCCACACACGTGGGCCTGCAGAAGAACCtaccgAATCCCAAAGAGGGACTTAAAAAATCCCAAAGTCGATCATTCATCAGCAACATCAAGCAAAAGAGACACTCTAAATCCAGGCTGAAGTCCCAGAGTAccgatggagaggaggaaggacaggagaCCTCTGGGAAAGAGGCGGGAGGACAGATCACCAGGGGAGGGAGGAAAAGGAAGACGATGAAGCTGAGTAGAGATCTGTCAGACCTGGTTGTTTTCACTAACTCTGTGGCCTCTCAGGAGGGACTGGACGACAGTACTCCTGGGAATGTTCTGTCGTTCAGTGAGACTCGTGCCCAGCAGCTAGTGAACCACAGAGCTGAGCGCTTCCTGTGTTTCAACCAGCGACAGCTGTCTAGAATCTACCCCTCAGCCTACCGTATAGACTCGTCCAACTTCAACCCTCAGCTCTACTGGAATGTGGGCTGTCAGCTGGTGGCTCTGAACTACCAGACAGAGGGTCGGATGATGCAGCTCAACAGAGCCAAGTTCATGGTGAACGGTGGCTGTGGCTACGCCCTCAAACCTCCACCCATGTGTAAAgGCTCGTTCAACCCGTTCAGTGACGACCCCCTCCCTGCCTACCCCAAGAAACAGTTGGTGCTGAAGATCATCAGTGGACAGCAGCTTCCCAAACCACCAGACTCTATGTTGGGGGACCGGggagagATCATTGACCCGTTTGTAGAGGTGGAGATCATCGGCCTGCCAGTGGACTGCTGCAAGGAGCAAACTCGAGTAGTGGACGACAacgGTTTTAACCCCGTGTGGGAGGAGAACCTGTCCTTTACCCTCCACATGGCGGAGGTGGCTCTGGTGCGTTTCCTCGTTTGGGACCATGACCCCATCGGACGAGACTTTGTGGGCCAGAGGACTGTGGCCTTCAATAGCCTGATGCcaggtTATAGACATGTGTACTTGGAGGGGTTGACTGAGGCGTCAATCTTTATCCACGTATCAGTTCATGACATCTATGGGAAGTGGAATCCACTAGTCCTGAACCCCAGCTTTACCATAATGCACTTTCTAGGAGCCCACAAGGGTCGTCAGCTAGGAGGCATCAGGGGCTTATTTAACAGGCCCTCTAAGTTTTCAGTAGACACCAGCTGTGGTTCGGCCCTCAGGAAACGCTCCATCAGTGACCACCTCCTCCGACGCACCGCCAGCGCCCCCGCCAACCGTCGCAAGAAAACCAAGATGAAGCTCGCTGAGTCCTCTACCTCCATATCAGACCGCAAGGCCTCCATATCAGACCGCAAGGCCTCCATATCAGACGGCAAGGCCTCCATATCGGACCGCAAGGACAGAGTGTGGGCCGGGGCAGGGGCTGGGGGGGAGGGGTCCCAGAAcagggaaagggacagggaggGGGTAATGGTGGAGAGACGCCCAACACCCCTCACCCACAGGCCCATCTCCATGCCCCTGGAGGGGCTACTGCAGGGAcagctctccctctgctcccccgACCAGGAGCAGACTGACCTGGGTGCAGACACACACATCGTAGAGAACTGACTAGGATATCCCGCCAGGAACGTCCCCCTTTAACCAGCCCGGGTCCCACTCTGTGGAACTCGTCGTCGAATCATCCGCCTCCCTTGAGCACAAAGTGTTCACCCCTTCCATCAATCACAACAACGCACAGGATAACACCACCGagtctgaccaatcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2381291 lncRNA upstream 19876 40671690 ~ 40672527 (+) False G2082509
TU2381287 lncRNA upstream 19876 40672072 ~ 40672527 (+) True G2082509
TU2381294 lncRNA upstream 20491 40671690 ~ 40671912 (+) False G2082509
TU2381316 lncRNA upstream 52012 40636576 ~ 40640391 (+) True G2082525
TU2381308 lncRNA upstream 68774 40622440 ~ 40623629 (+) True G2082517
TU2381753 lncRNA downstream 5823 40842242 ~ 40842451 (+) False LOC110508042
TU2381754 lncRNA downstream 6409 40842828 ~ 40843107 (+) True G2082888
TU2381758 lncRNA downstream 9053 40845472 ~ 40846039 (+) True LOC110508042
TU2381767 lncRNA downstream 15380 40851799 ~ 40931560 (+) True G2082897
TU2381782 lncRNA downstream 37442 40873861 ~ 40874825 (+) False LOC110507226
XM_036965107.1 mRNA upstream 22324 40661246 ~ 40670079 (+) False LOC110508037
XM_036965110.1 mRNA upstream 22324 40661312 ~ 40670079 (+) False LOC110508037
XM_036965108.1 mRNA upstream 22324 40661315 ~ 40670079 (+) False LOC110508037
XM_021588481.2 mRNA upstream 22324 40661331 ~ 40670079 (+) False LOC110508037
XM_036965111.1 mRNA upstream 22324 40661338 ~ 40670079 (+) True LOC110508037
XM_021588488.2 mRNA downstream 4287 40840706 ~ 40847141 (+) False LOC110508042
LOC110507226 mRNA downstream 20711 40857130 ~ 40878102 (+) False LOC110507226
LOC118944684 mRNA downstream 68095 40904514 ~ 40907313 (+) True LOC118944684
XM_021588491.2 mRNA downstream 155659 40992078 ~ 40996568 (+) True LOC110508044
XM_021587121.2 mRNA downstream 326824 41163243 ~ 41168484 (+) True LOC110507231
TU2380828 other upstream 734652 39957215 ~ 39957751 (+) True G2082162
TU2380578 other upstream 758568 39931874 ~ 39933835 (+) True G2081949
TU2380477 other upstream 779325 39895667 ~ 39913078 (+) False LOC110507223
TU2380510 other upstream 855020 39827658 ~ 39837383 (+) True G2081884
TU2378436 other upstream 2747252 37944932 ~ 37945151 (+) True G2080014
TU2381755 other downstream 7095 40843514 ~ 40844780 (+) False LOC110508042
TU2381759 other downstream 8410 40844829 ~ 40846039 (+) False LOC110508042
TU2381889 other downstream 144951 40981370 ~ 40984854 (+) True G2083005
TU2382143 other downstream 375785 41212204 ~ 41212772 (+) True G2083239
TU2382447 other downstream 669940 41506359 ~ 41507173 (+) True LOC110507232

Expression Profile