RNA id: TCONS_00005341


Basic Information

Item Value
RNA id TCONS_00005341
length 4370
RNA type mRNA
GC content 0.41
exon number 9
gene id XLOC_002893
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34021368 ~ 34033680 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCCTCgaaagaataaactcagtcggaaGGATGAGAAAACAGAAACTTTCAATGTTACAGAATAATTTTACAGAGCGGCACACGTCACATCAGCCggtgtgtgaatgaagtgcttgatGCATCACTGCCCTGTgtgcccgtccgctacgccactgaccgTCCAACAGATGGCCTACAGTACATTAGTTCTTCATTTTACAAAACGCAAAAGCACCCCTTGTCCCTCCTCGCTTCCTGTAGTTGCCGCTCTGACAGCGCGCTGCGCGGGTTTGTGTTTCGCGGGAGCAGGCGGATGACAATAACATCATATTATTTACTTCTTCCACGGGTACATTACTGTCATCATTTCAACTGAAAAATGAGTTTATGGGTGGACAAATACCGACCGACGTCCTTGGCTAAACTGGACTACCACAAGGAGCAAGCTAACCAGCTCAAAAATCTGGTTCAGTGTGGCGATTTTCCTCATTTGTTGGTTTATGGACCCTCTGGAGCTGGCAAGAAAACTCGGATCATGTGTTTGCTTCGAGAGCTTTATGGAGCCGGGGTGGAGAAACTCAGGATTGAACATCAGTCTATCACGACTCCATCAAAAAAGAAGCTTGAAATCAACACTATTGCCAGCAACTACCATCTAGAGGTGAATCCAAGtGATGCCGGGAACAGTGACCGCGTGGTCATTCAGGAGCTGATAAAAACAGTCGCACAGTCTCAGCAGATTCAGTCCAGCGCTCAGAGGGAGTTCAAAGTGGTGCTGCTCACGGAGGTGGACCGCCTCACTAAAGATGCCCAGCATGCCTTGCGCCGTACGATGGAGAAGTACATGGCCACTTGTCGACTGATCCTCTGCTGTAACTCCACGTCAAAAGTAATCGCCCCCATCAGGAGCAGGTGTCTGGCTGTGAGGGTCCCTCTGCCAAGTGTGGAAGAGGTGTGCAGTGTCCTGTCAGGCGTGTGCAGGAAGGAGGGTCTGCTGCTTCCTCCAGAACTGGCCAAACAAATCGCAGAGAAATCTGGCCGTAACCTCCGTAAGGCCCTGCTGATGTGCGAGGCCTGCAGAGTTCAACAGTATCCCTTCTCTCCAGACCAGGACATCCCAGAGACAGACTGGGAGGTTTACCTCAGAGAGACCGCTAATGCTATAGTTAGCCAGCAAAGCCCTCAGAGGCTTTTGGAAGTTCGTGCACGATTGTATGAACTTCTAACTCACTGCATCCCACCAGAAGTCATCATGAAGGGTCTGGTGACTGAGTTGTTGAGTAACTGTGATGGACACCTGAAGGCTGAAGTGGCTCAGATGGCGGCCTACTATGAACACAGACTGCAGCTGGGCAACAAAGCCATCTACCACCTGGAGGCCTTCGTCGCAAAATTCATGGCCATCTACAAGAAGTTTATGGAAGATGGGCTTGACAACTTTATGTTCTAAGGAAATGTAAATGAGAGATTATATTactgtttttcataataaaagacaTCTACAAATGTTTGTGACCGGTTGTTATTGTCACTGGGAATGTCGTTAAAGGGGTACAGAATTCTGGATATGTGTGAAATAAGCAAAATATTGACAACAAAGCACAAATACAATGAAAACTGGGAACTTCAGAGACaatcatttaaaaagtgcaaataaGTTACAGTTAATCTTAAAAAGCAATGATACACAAGTGGACTTGTGATGACAATTAGACAGTTAACAATTATTTAATACCCATGTGATCATGTAATTTACACATCAGAAAATACATGACCTGTTCTAAAGAGACGCTTcatccagaaatgaaaattctgtcatcacatACTCAACTTTACCCGTTAACCTTCTTTTCTTGTGTTAAACATGAAAggagatattatgaagaatgctggaaacctgaaaccattgacaATATTTATGtttcctactatgtaagtcaatagttacaggttttcagcgtttttttaaatatcttctttcatgtttgACACGAAACACATGAAGGTGTGATATAGATCAGGGATGTCCACTtacgctcctggagggccggtgtcctggagagtttagctccaacccaatccaagacacctgaaccagctaaccaagctcttactagatatactaaaacaggtgtccaaactcagtccgggagggccggtgtccttaaaaatttagctccaactctcCTCAAAACACCTGCCAGGACATTTCAAGTGAGCAAAGTAAGTGCTTGATTACTGGCTtgggtgtgtctgattggggatACAGCTAAACTATGCTGAACGCTGGCCTTCCAGGACCGGATCTGAACACCcctgtactagaaacttccttgctggtgtgttgaagcaagttgcagctaaactcagcaggacattggccctccaggacagagtttggacacccctgatatagatATTTTTAGTTTGGTAAATAGTGAATAcgctttcatttttgggtgaactatccctttaacatcacTTATTTACACTAATCATACTAAGAACCTCTATAACATGCCAAACAAATACAATACATTTCCCTTATAAATGTTTTATCGTGCAAAAACCAAACTGCCGTGCAAACTTGACAAAACAACGCAAATATCttactttttacaaataaataaggaTTTTAAAGCTAGCCATTACATAACTATCCTGGGGACTCGTTTATAAAAATGTGTAttcatttatacacatttaattCAGAGAAATGAACGTTTTAGATAGCCACTTTACAAACTCCCCCAattaaaggggatagttcacccaaaaaacaaaacttttctcaTCATGTACTCACCCGCCATTTGATCTAAACCTGTTTTTGGttcttacttctgttgaacataaagaaGATATTTATGGCTGCCAGTTTCaaacgttcttcaaaatatcttatttagtgttcaacagattaaagaaactttaacaaaggtttggaaccacttgagagtgagtacaTTATGACAAATCCTTCTCTCATTTTTtcaggtgaactatctctttatatGAGCACCAGTCCAAATTCCAAATCTTTAGCTTGAGAATGGCAAGGGGCAAAACCCAATTTGTGCAGATTTACGTTTTATAAATAGCATACATTAGGGCTTTTCACACCTGAATtagttaaccctgggtcattttTACTCTGGATAAATGTAATCCTGTGATATATAATCCTGTTTACTccatctgatgcatttttatatttaataacaattGTCATTATTGCCTTTAAACACTAAAACACCAATTTCTATATAGTTTATGCCGTTTCTGTGACATAAATAAGTGACGAGTGGTCTTAATGTAACATTCAAAGGCCATATAATTTCAGGCTGAATGTTTAGGGTTAAGCACAGAACTGGTGCTTCTAAATCACAAATATGAAACACTTCTTTACCTGCGGTTAAAACTGGGGTTTAGTACAagacatgggctggtataagattctgattaTATGATAACCTCACATAAAAACATCGGATTTactgtattgtaattactgccctaaaattttttttaaatgtcagggtaaaaaacaacaatctTTTCACCCCATTGAACACAGTATGTTTTATATTAAGaagcatttataatgttttaaaacagtaaacaggttaaaataattaatgtcaggttaaatgattaaaataaatgattgacttCTGTGGTCTTCAATAGTTTCAAAAACATAAAGATTTTTTAACCTgtaaaggcagaacattttaggggttttaaaaccttgacttttccttgACTTTAACTTGGATAAACTGGTTATCATCACGTGCCGATTTAATACAACAAAAACTCAGGGTTAAGCACAGTGTGAAGAGACCTACAGTAATGAGAAAAccactaaataaattaaaagtgtCAGCAGAGCTGTATCAATCATTTTTTGGTGGTTAACTTGTGCCTCTTAAATGCATAGTAGATAACAAGGCACATAGTGATGAGCATGCAGGAGCTCACCAGAGAGAGAAAGCCGACCACAGGCTTCTTGGTGAGGACATATCGGCCCGATCCTTGAGCTGGAGCATGGGGACACTGATGCTGAGATGTGCTTGGGGCTGGGAAGCCATTGTGGCGGATAATGTTTTTGTAATGGCCCAGTGAGGATTTTGAAATCACCTCTTCCTGCACGTGACCATACATGCCAAAGCCTGGGTCCCGCTGGTCACTGAATGCGTATGCAAAATAGCCTTTTAGATTCACTGCATCCAGCATgtatgctaaaaaaaaacagatcagagGTTAGAAAATGACCGTAGTGAACTCATGACGTAACTATAAATCGAATTCAGATACCAAGATAAATGAGGCCAATGTTTTGGGAatagtaaacaaatattttccaaaGCTCAGATGAAGAGCGGTgtg

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005663 DNA replication factor C complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020809-3 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin musculature. Orthologous to human RFC3 (replication factor C subunit 3).

Ensembl:

ensembl_id ENSDART00000180734

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005339 lncRNA downstream 141004 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 356579 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 402426 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 856795 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 1124424 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006086 lncRNA upstream 163102 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 718630 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 734176 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 734296 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 734331 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00005340 mRNA downstream 19183 33999869 ~ 34002185 (-) True XLOC_002892
TCONS_00005336 mRNA downstream 399629 33614377 ~ 33621739 (-) False XLOC_002889
TCONS_00005337 mRNA downstream 399629 33617491 ~ 33621739 (-) False XLOC_002889
TCONS_00005334 mRNA downstream 433058 33580285 ~ 33588310 (-) False XLOC_002888
TCONS_00005335 mRNA downstream 433262 33580363 ~ 33588106 (-) True XLOC_002888
TCONS_00005344 mRNA upstream 9881 34043561 ~ 34046757 (-) True XLOC_002894
TCONS_00005345 mRNA upstream 25327 34059007 ~ 34067286 (-) True XLOC_002895
TCONS_00005346 mRNA upstream 52911 34086591 ~ 34089779 (-) False XLOC_002896
TCONS_00005347 mRNA upstream 52913 34086593 ~ 34107919 (-) False XLOC_002896
TCONS_00005348 mRNA upstream 71053 34104733 ~ 34107919 (-) True XLOC_002896
TCONS_00005331 other downstream 644154 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 644282 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 644427 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005308 other downstream 1410599 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005358 other upstream 293582 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 950938 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1336157 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1586653 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 1620565 35654245 ~ 35654354 (-) True XLOC_002923

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_16414561_16417605.mRNA True 992 mRNA 0.48 8 CI01000304 16414502 ~ 16417605 (-)