RNA id: TCONS_00005344


Basic Information

Item Value
RNA id TCONS_00005344
length 1648
RNA type mRNA
GC content 0.48
exon number 7
gene id XLOC_002894
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34043561 ~ 34046757 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATAAAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCACAGCAGACAACGAATCCTCCCTCAGTGAGGAGTCGGACAGCCTGGAGCAAGAGCTTGAAAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTCCACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGACAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTATGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-52 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation.

Ensembl:

ensembl_id ENSDART00000099648

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005339 lncRNA downstream 163197 33876131 ~ 33880364 (-) True XLOC_002891
TCONS_00006085 lncRNA downstream 378772 33663165 ~ 33664789 (-) True XLOC_002890
TCONS_00005338 lncRNA downstream 424619 33617624 ~ 33618942 (-) True XLOC_002889
TCONS_00006084 lncRNA downstream 878988 33158589 ~ 33164573 (-) True XLOC_002877
TCONS_00006083 lncRNA downstream 1146617 32894997 ~ 32896944 (-) True XLOC_002875
TCONS_00006086 lncRNA upstream 150025 34196782 ~ 34198566 (-) True XLOC_002900
TCONS_00006087 lncRNA upstream 705553 34752310 ~ 34772155 (-) False XLOC_002903
TCONS_00005364 lncRNA upstream 721099 34767856 ~ 34772211 (-) False XLOC_002903
TCONS_00006088 lncRNA upstream 721219 34767976 ~ 34772211 (-) False XLOC_002903
TCONS_00005773 lncRNA upstream 721254 34768011 ~ 34768673 (-) False XLOC_002903
TCONS_00005341 mRNA downstream 9881 34021368 ~ 34033680 (-) False XLOC_002893
TCONS_00005342 mRNA downstream 10106 34024254 ~ 34033455 (-) False XLOC_002893
TCONS_00005340 mRNA downstream 41376 33999869 ~ 34002185 (-) True XLOC_002892
TCONS_00005336 mRNA downstream 421822 33614377 ~ 33621739 (-) False XLOC_002889
TCONS_00005337 mRNA downstream 421822 33617491 ~ 33621739 (-) False XLOC_002889
TCONS_00005345 mRNA upstream 12250 34059007 ~ 34067286 (-) True XLOC_002895
TCONS_00005346 mRNA upstream 39834 34086591 ~ 34089779 (-) False XLOC_002896
TCONS_00005347 mRNA upstream 39836 34086593 ~ 34107919 (-) False XLOC_002896
TCONS_00005348 mRNA upstream 57976 34104733 ~ 34107919 (-) True XLOC_002896
TCONS_00005349 mRNA upstream 73786 34120543 ~ 34123733 (-) False XLOC_002897
TCONS_00005343 other downstream 10140 34032283 ~ 34033421 (-) True XLOC_002893
TCONS_00005331 other downstream 666347 33377130 ~ 33377214 (-) True XLOC_002885
TCONS_00005330 other downstream 666475 33377001 ~ 33377086 (-) True XLOC_002884
TCONS_00005329 other downstream 666620 33376818 ~ 33376941 (-) True XLOC_002883
TCONS_00005308 other downstream 1432792 32542536 ~ 32610769 (-) False XLOC_002866
TCONS_00005358 other upstream 280505 34327262 ~ 34327394 (-) True XLOC_002902
TCONS_00005381 other upstream 937861 34984618 ~ 34992414 (-) False XLOC_002907
TCONS_00005403 other upstream 1323080 35369837 ~ 35387242 (-) True XLOC_002918
TCONS_00005406 other upstream 1573576 35620333 ~ 35620449 (-) True XLOC_002922
TCONS_00005408 other upstream 1607488 35654245 ~ 35654354 (-) True XLOC_002923