RNA id: XM_021599284.2


Basic Information

Item Value
RNA id XM_021599284.2
length 3199
RNA type mRNA
GC content 0.51
exon number 17
gene id LOC110521609
representative False

Chromosome Information

Item Value
chromosome id NC_050570.1
NCBI id CM025857.1
chromosome length 46327593
location 25656346 ~ 25683055 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGTCATGACCTTTGTTACTGTCTGTCAACAAAAATAGCTACATCTATCGTTTTCTCCGGTGAATGTTTACGTTCAAACTGGCTGTGTGTTGATTTAGAGATACGTATTAGCCCTGTTAACTAACGGACATGGTCTGAAAATGTTGCAGGAACATCTCTTTTCGTACcaacaagttagctagctaacgttagttgttAGCTCTTCGCAACAACTAGTTTCAGCTAGATTTGGCTATCTAGGTACAGTAGCAAGTTAACAAGACGAGCCGAGGCTAAAGCTATATTTATTTTTGGTCAGGTGTCGAGCCTTCCCGTCTGTTTCACTGTGCATGATATGGCCTTCAATTCCTTGACCATGGATGAGGCATCCCCTGCATCTCTGACGGATCTGTGTCTGTCCTATGTCAGTAGGAACCTGGAGAGGTTCTGTGTGAAGCATGCTGAtggatctctctgtctcagagACTCTCTGCTGTTTCCCCAGGAGCTAGCTGACCAGCTGCTGGCTAAGATGGCCACTGACGgTCTGTTGAATGACAGTACAGTAGGAGTGTTTCGTAGCAGTGAGTACCTTCGGCTGCGTCGTGCGTGTATTCGTACGGCCCGTATCTCTGCCGAGGCGTTCCAGAGAGCTCTCTGTCCTCACCGCCTGCTGGAGCTGGACGCTGCTAGGGTCAACGCTGACCTCACAATCTCTGACATACTACATGGCCTTGCCTCCAACAAACACTGCCGGGTAAGCACACTAATAAGAGAGCCTCCAGCAGTTAGACACCCACAAACACTaaccttctctcactctcccccttctccctctcccccccaggAGAGCTTGCAGCGGTTGGTCCTTACAGGTCTGACCATGTCCTCTCTGGAGGAACCGTCATGTCACTGTTTCAGCTCTCTCCAGGGGCTGCGGTCCCTCTCCCTGGCCAATGTGGACTTCTACGACTCTGGGCTGGCTGATGTGTGTTCCCTGTCCCGCCTGGAGAGCCTGGACCTGTCCAACACCTCCGTGACCAACCTCAACCCTCTACTGGGactcagagagaggctgaggtcACTAACACTACACCAGCTGAAGAGGCTGGAGATGAGCACTGCCCAGCTACTAGCTGTCATTGGACAACTGGAGGCACTGCAGCACTTGGACATCAGTGATGATAAACAGTTCACATCAGATGTGGCTCGTCAGCTGCTGGGTGAGCCTGGGATCCTGCCTGCTCTGGTCTCGCTGGATGTGTCTGGACGCAAACAGGTGACGGATGCGGCGGTCAAGGCATTTGTAGAGGAGCGTCCAGGGATGACCTTTGTTGGTCTGCTGGCTACAGACGCTGGCTTCTCTAACTTCCTCAATGGAAAGGGCAGCCTCAAGGTGACAGGAGAGGCCAATGAGACTCAGATCTGTGAGGCGCTGCGTCGCTACAGTGAGAGGGAGGGCTTTGTCAGAGAGGCTCTGTTTCATCTCTTCAGTCTCACACACGTCATGGAGAAACCACGCCCTGACATACTCAAGTTGGTAGTTTTGGGGATGAAGAACCACCCTGCCACCCTGAACGTCCAGTTGGCAGCCAGTGCATGTGTGTTTAACCTGACCAAGCAGGACCTGGCAGCGGGCATACCTGTTAGACTGCTGGGCACAGTCACTCAACTACTGCTGGAGGCCATGTGCACCTTCCCTAACCACCAACAgTTGCAGAAGAATTGCCTGCTCTCTCTGTGCAGTGATCGCATACTGCAGGAGGTTCCCTTCAACAGGTTTGAAGCAGCTAAGCTGGTGATGCAGTGGTTATGTAACCATGAGGACCAGAACATGCAGAGGATGGCTGTGGCTATCATCTCTATACTGGCTGCcaagTTGTCTACAGAGCAGACGGCACAGCTGGGAGCAGAGCTCTTCATAGTGAAGcaGCTTCTCCACATTGTGCATCAGAAGGCTACCCAGGGCGTGGTGGACGCCACCCTCAAGTTCACACTGAGCGCGCTCTGGAACCTCACTGACGAATCACCAACCACCTGCCGCCATTTTATAGAGAACCAGGGACTGGACCTGTTCATCAAAGTACTGGagtcATTCCCCTCTGAGTCTTCCATCCAACAGAAGGTGTTGGGGCTGCTGAATAACATAGCGGAGGTTGGGGAGCTGCATGTGGAGCTGATGGTTCAGGGCTTCCTGGATCACATCTGCTCCCTGCTCCACAGCCCTGAGGTGGAGGTGTCCTACTTCGCTGCTGGGATACTGGCCCACCTCACCTCCAGAGGAGAGGCTGCTTGGACACTCAGTATCACACTGAGGTCTGACCTGCTAGAACAActgcactCTACCATCCTGAAGTGGCCGACACCAGCGTGTGAGATGGTGGCCTACAGGTCCTTTAACCCTTTCTTCCCCCTGTTGGAGTGTTTCCACACCCCAGGAGTTCAGCTGTGGGCGGCCTGGGCCATGCAGCATGTCTGCAGCAAGAACGCCCCTCGGTACTGCAGTATGCTGCTGGACGAGGGAGGTCTGCATCAGTTGGAGAAGGTCCAGACACACCCTGACACCCACGCAGACGTCATGCGATTGGCCGAGAGCATTCTGGAGAGCCTGCAGCGCCACCAAGCTCGCACCAGgcagaccacacagacacacacacacacccgctgcCCGctacaaccccacacacacaaagAGGGTGACAAGCCCTGATCAGAACCTATCCCACTGCTACCTTCAGGACAAGAGGCCATTGAaagtgtgtgcgtgagtgcgttCATTAGACAGGGGTGAGGACGGACACCTTGTCACCCCCCATCCTGTCTGAAGGTGGTGCTATAAAGTGAATGAGAGGACAGAAACTATGCATTTCTTTGCACACACACCTTGCTATGTTTTCTAGAGTTTGGTAAGCAAAAGTAGTACTATGTGGCTACTTATGCGTGCTACTGATAAGCAAATTAATATTATGGAAAACAAAATGCTAAGAAAATAGTTGTTGGTTAAAAACACTAAGGTCGATGTCTATGCCCCCACGTAAATCTATTTATAATGAAATAATCACCATAGAAATCTGTTCATTTAAACTAGAGACGTTTTTTTGCATttgatgcatctcaatccaccacatccacctacagtaccagtcaaaagtttggacacacctactcattcaagggtttttatttatttttactattttctacattgtagaatgata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2535633 lncRNA downstream 62754 25592534 ~ 25593592 (-) True G2216807
TU2535654 lncRNA downstream 65152 25590737 ~ 25591194 (-) True G2216823
TU2535498 lncRNA downstream 273548 25361917 ~ 25382798 (-) False G2216696
TU2535497 lncRNA downstream 273548 25380876 ~ 25382798 (-) True G2216696
TU2535505 lncRNA downstream 301506 25350871 ~ 25354840 (-) True G2216699
TU2535824 lncRNA upstream 136200 25819255 ~ 25857045 (-) False G2216976
TU2535828 lncRNA upstream 136200 25819255 ~ 25857045 (-) False G2216976
TU2535818 lncRNA upstream 169888 25852943 ~ 25857045 (-) False G2216976
TU2535825 lncRNA upstream 169888 25852943 ~ 25857045 (-) False G2216976
TU2535827 lncRNA upstream 169888 25852943 ~ 25857045 (-) False G2216976
XM_036968624.1 mRNA downstream 172485 25429088 ~ 25483861 (-) False LOC110521606
XM_036968623.1 mRNA downstream 173054 25429088 ~ 25483292 (-) False LOC110521606
XM_036968622.1 mRNA downstream 173090 25429088 ~ 25483256 (-) False LOC110521606
XM_036968621.1 mRNA downstream 174433 25429088 ~ 25481913 (-) False LOC110521606
XR_005040861.1 mRNA downstream 175517 25431688 ~ 25480829 (-) True LOC110521606
XM_021599293.2 mRNA upstream 96251 25779306 ~ 25805082 (-) False LOC110521612
XM_021599292.2 mRNA upstream 96251 25779306 ~ 25805652 (-) True LOC110521612
XM_021599295.2 mRNA upstream 255716 25938771 ~ 25942246 (-) False LOC110521615
XM_036969397.1 mRNA upstream 255716 25938771 ~ 25942364 (-) True LOC110521615
XM_021599297.2 mRNA upstream 288713 25971768 ~ 25973905 (-) False LOC110521616
TU2532260 other downstream 2456940 23197647 ~ 23199406 (-) False G2213647
TU2532275 other downstream 2476735 23178506 ~ 23179611 (-) True G2213654
TU2532098 other downstream 2655098 22986359 ~ 23001248 (-) True LOC110521564
TU2531474 other downstream 3745610 21907963 ~ 21910736 (-) True G2212908
TU2531311 other downstream 3989731 21665964 ~ 21666615 (-) True G2212755
TU2536522 other upstream 234299 25917354 ~ 25920245 (-) False G2217605
TU2536525 other upstream 234299 25917354 ~ 25919877 (-) True G2217605
TU2536746 other upstream 553630 26236685 ~ 26237398 (-) True G2217805
TU2536765 other upstream 585291 26268346 ~ 26341495 (-) True G2217824
TU2537095 other upstream 1205834 26888889 ~ 26890611 (-) True G2218118

Expression Profile