RNA id: TCONS_00062322


Basic Information

Item Value
RNA id TCONS_00062322
length 5912
RNA type mRNA
GC content 0.44
exon number 30
gene id XLOC_031816
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6850821 ~ 6922290 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGAAGACAGGACTCCTGACAGCGCTCCCCGGTGGAGATGCAGCATCCGCGGTGACACTGCAGCCTCAGCACCGCAGATCTCCCGCTGACACTACCCTATTTCTCCATCAAGTGGGATTTGATTTCATCGCTCGGTGCATGTGTAGAAACGCGTTACTGCACGCTGTCTGCTGTCGTGCGTGTGTGGACGTGGTGACGATGCGTCCACGCCGCGGCGATCCACGCAGAGGCGGGGAGAGGAGGGGGGTTGAGCCCTGCTGCTGCTGATGCTGATGAAGCGACCAAGTCGACGAGAACCGCGATCCGAGACGCACGATCCAGCACACCGCTTTTAGCCGAAGATGGTAGCGGTGCACGCCTCTGCGCACTCCGTGGCCTCTGCCGAGTGGATCATCTGCCTGGATAAGAGGCCAGCTGAACGCTCGGGAGAAGACGTGGACATCATTCTGGCTCGGCTGAAGGGTGTGAAGGCCTTCGAGAAGTTTCATCCTAACCTGCTGCAGCAGATCTGCATGTGTGGCTTTTATGAGTACCTAGAGAAAGGCATCACCTTGTATCGACAGGGTGACATCGGCACCAGCTGGTACGCCGTTCTGTCTGGATCTCTGGACGTCAAAGTGTCTGAAACAGCCAACCATCAGGATGCTGTAACAATCTGTACTTTGGGAGTGGGAACAGCATTCGGGGAGTCAATTCTGGACAACACTCCTCGACATGCCACGATTGTCAGCCGAGAGAACAGTGAACTTCTGCGCATCGAGCAGAGGGAGTTCAAAACCCTGTGGGAGAAATACAGGCAGTGCATGGCAGGGCTTCTTGCTCCGCCGTATGGAGTGATGGACAGTGGAGCGACTAATGATAGAATGCCGGACAAAGACAATCTCAGCAACGATCCTCTCAATTTTATGTCAAAAAACCTGAATAAGGTGCCGTCAGAAAAGATTTTGAGGGCAGAAAAAGTGTTACGTAATGCAATACTGGCCAGAGCTCCCCACATGATCAGAGACAGAAAATATCATCTGAAAACATACAGgcagTGTTGTGTGGGCACTGAGCTGGTGGACTGGTTGCTTCAGCAGAGCTCATGTGTTCACAGTCGGGCTCATGCTGTGGGAATGTGGCAGGTGCTGCTGGAGGAAGGAGTTCTGAATCACgTCGACCATGAACTCAACTTTCAAGATAAGTACCTCTTTTACCGTTTCCTCGACGATGAGGAGGAGGATGCGGTGTTGCCTAGCGACGATGAGAAACGCGAAGCTGAGGAAGAGCTGCAGGAGACACTCCTCTTCCTCTCTCAGATTGGCCCTGACGCGCACATGCGCATGATCCTCAGGAAACCGCCTGGTCAAAGAACAGCTGAAGACCTGGAGATTATTTATGATGAGCTGCTGCATATCAAAGCTGTCTCTCACCTGTCCAACACTGTGAAGAGAGAGCTCGCCGGTGTCCTCATCTTTGAGTCACACGCCAAAGCAGGCACTGTCTTGTTTAATCAAGGGGAGGAAGGCACTTCTTGGTATATTATCCAGAAAGGATCAGTAAATGTTGTCATCTATGGCAAGggtgtGGTTTGTACGCTGCATGAGGGAGATGATTTTGGCAAACTGGCGCTGGTAAATGACGCCCCCCGCGCCGCTTCCATCGTGCTGAGAGAGGACAACTGCCACTTCCTGAGGGTGGACAAAGAGGACTTCAACCGTATACTCAGGGATGTTGAAGCAAACACGGTGCGTCTAAAAGAGCATGAGCAGGATGTTTTGGTACTACAGAAGAGTCTCCGGCCCTCCAGCCATGGAAACATCCCAGCCCACTTCAAATACACTGTGATGTCAGGCAGCCCTGAGAAGATTCTGGAGCATCTGCTGGAGACAATGCGACTGGACATTCATTTCTCTGACCCAGATCCAGCTCTTGATGACTTTGTGCTCATGCACTGTGTTTTCATGCCCAACAGTCAGCTGTGCCCCGCTCTTCTGGCCCACTATCACTCTCAGGCCTCTCAGGGCTCTGAGCAGGACCGTCTAGACTACGCTGTTGCCAGTAAGAGACGAGTGCTCAGCTTGGCTCTGCGCTGGGCTGCCCTGCAGGCCCACCATCTGCTGGAGGATGACACTGCGCTCGGCTTTCTGGAgGAGCTGCATGGCTTCGTGTCTAATGATGCCAGAGTTTTGCGTCCACTGAAGGAGCTGCTGCCTGAGCTAGAGAAGATCATCAAGCAGTATCCAGATGATGCAAGATCTTCTCAAAAAAAGCATAAAGTCCTCTTGCGGCAGTTCAGCTCTGGAGAGGAGAGACTTGCAAAAAAGCAGCCAATAAGGAGCTTTGATGACATTCTGTTGAAGGTGTACTGCAGTGATCACACATACACCACTATTCGTGTTCCTGTGCTGGCCACGGGGAGAGAGGTGACCGCTGCTGTAGCCGATAAACTGGGATCCACAGAAGAGCTGCTTTTGATCAACCTCAGCGCATCTGGAGAAAAGCAGATTTTAAAGCCCAATGATGTGTCGGTGTTCCAGTCTCTGGGAGTGAACGGACGCATGTTTGTCTGCCCTAGAGAGCTGCTTGATTCACTGAATCCACTTCCAGAGCAGGAGGGTCCGTCCACAGGTTCTATGTCCAGTTTTGAGCTGATGAGCTCTAAAGATCTGGCCTTTCAGATGACCCAGTACGACTGGGAACTTTTCAGCTGCGTACATGAGtatGAGCTGGTGTATCACACATTTGGACGGCAGGCGTACCGACGATCCACAGCCAATCTGGAGCTGTTTCTGCGGCGCTTCAATCAGCTGCAGCTGTGGGTGGTGACGGAGGTCTGTCTCTGCGGGACGCTCAGCAAACGGGTGCAGCTCTTGAAGAAGTTCATCAAGATCGCCGCCCACTGTCGAGAGTTTAAAAATCTGAACTCTTTCTTCGCCATTATCATGGGCATGTGCAACCCAGCTGTGAGCAGACTCATCCAGACATGGGAGaaactgcCTAGTAAATTTAAGAAGTTCTACGCAGAGTTTGAGAGTTTACTAGATCCATCTAGGAATCATCGTGCTTACCGCCTCACTGTGGCCAAGATGGAGCCGCCAATCATTCCCTTTATGCCCCTCCTCATTAAAGACATGACGTTTACCCATGAGGGGAATAAGACTTTTATTGACGGACTGGTGAACTTTGAGAAGATGcGGCTGATTGCTAACACAGTGAGAGCGGTCAGGCATTGCAGGAGCCAGCCTTTCAATGCTGAAGCGTCTCCAGCCAGTAAGAATCCACAGGAAGTGAGGAATTATGTGCGCCAGCTGACTGTGATTGACAACCAGAGAACCCTATCACAGCTGTCCTTCAGACTGGAGCCAAGACGGGGCTAAGGACCAATgctgagtctctctctctctctttctccctctctctctctctctctctctctctctctctctctctttctaaaaTACACCTACTGTATATCCAGTTTACAGCAGTACAACTCAATTTTACGTCTATTGGCTGCCAGAGCTGTTGCCGACTGTATGTGCTATCACTGCCAACTCGACTTTGTGTACAAGATGCATTCTCATACACGAACGGTCAAATTAGATATCAGTAAGgtttttaaaagaagatttaCCTCACcaacactgcatttatttgatccaaaataaagtaaaacatgtGAAATAAGATCACTGTttcaaacagattaaaatgtagattaaaatgtaatttattcctgtgattgaAAGGTGAATTTTTAGCATTATTACTCTGTTAatgaaaaaaatcaatcaatcaatcaacttttTCAATGTACTTTAATGTCTcgtgattcttcagaaatcattttaattatgGATTATAATCAGTACTCAATCTTTTATAATGATTCTTATAAGTATTagtgttaaaaacatttttacagtgctcCATAGTTTTGTggaaatttatatattttacttttaagatTCTTTGATGAAACTggttcacagaaatcagtcaagtttggtgaaggagaaatcatggtttggggttacattcggcatgggggtgtgcgagagatctgcagagtggatggcaacataagcagcctgaggtgtcaagacatttgtgctgcccattacattacaaaccactggagagggcaaattcttcagcaggatagcgctcctcatacttcagcctccacatcaaagatcctgatagcaaagaaggtcaagatgcttcaggattggccagcccagtcaccagacatatgaacattattgagtatgcctggggtaagatgaaataaaaggcattgaagatgaaaccaaaaaatattgatgaactctgggagtcctgcaagaacactttctttgccattccagatgactttattaataagtcatatgagtcattgcagagatgtatggatgcagtcctccaagcttatgggagtcatacacaatattaactcttttcccactgcaccatgactttatattctatactgtacattattcctgttaagtgacaagagttgtgtctaagcaaagtcagacgttACTGCCctagttaaataattaataatcaaggcaaaattatattttattttggtaaaataagcgtaatctagaagcctttacctactatataagccacttctgataccaaatgatcaactagaagtcaagttattatttgctgttcctaaaacttggattggggacaagacttttgtcaggtagtgtatatatatatatatatatatatatatatatatatatatatatatatttttttttttttttttttttttataagtgtcTTCACTTTCACTCTTGAACAATTGAATGTGTCCTAGATTAATAAAAGTAAAGAcatgttaaatattaattttgagTGCTACTTTTGAATTTCTACAAAAATATGAAGCAATCCAACAGATTTTAAcactaacaacaacaataataataataataatagattttttaacaTATTAGAAAAATTTCTGAAGAATGTGACACTGAAGACGGCAGTATTGATGCaaaaaaatctgctttaaatcacaggaataaatgtcGTTTTTAAACTATATTCAATAAGAAAACATGTCTTTTAAATTGCAACAATATTTCCAACGTTGTAAGAGTTTACTCTGTTTTgaatctttttaaaaatgcaacctTGGTGGGCAGGagaattttcttttaaaacagttaaaaatccTACTCATCTCAAACTTTTGACCAATATGTGTGCTTGATTGTGTGAGAGTGTATGCGAGTGGCAAGCCAATGACTTTAGTATTAAGAGCTACCATGTGTGTgcgtatgcatatgtgtgtgcgtatgtaaAATGCAGTCTACTGTACACCCTTTGATTCAGTCATGTGAGGTCATAGTTACAGAAATTCTCATTATTCCCTTATACTGTACTGTAGCCATTGCCTGTGCTTGTTCCTACATTTCTATCATCCCAACGCAAAACAATCCTAAAAATAAGAGTTTAGTACAAGCTACATATCATGCAAACAAATAGTGACTCCGGCCACAGAAAATCAATCATCGATTCTCTCCATAAAACCTTCCAGGCCTCAATGATTTGTGTTACAAGTTTCAAGTCATTCAGTATAAGTATTAGTATTCTGTCTCAAGGACTATTTTTGTTACCACTGGCTCAATTATGTGCTAGTAACTTACCTCTCGCCATAGCCTGTAGCATTATTGATGCCATTTTGTACATTGagttatatttgcatatttttgggTTGGACCCATGTTTTTTTGCTAAGTTATCATAATCGGTCTGAGAAGGCCTTTGTTTGTTCTCATTGTGCCGTTTGGAAAGTGagacgctgtgtgtgtgtgcgtgtgtataagGCACTTATTTTCTTTTAGGAAAATGTCTACGCCTGCCTTGTAAATAAATGTACCGTTGAACACTT

Function

GO: NA

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04072 Phospholipase D signaling pathway
ko04024 cAMP signaling pathway
ko04670 Leukocyte transendothelial migration
ko04911 Insulin secretion
ko04261 Adrenergic signaling in cardiomyocytes
ko04131 Membrane trafficking

Ensembl:

ensembl_id ENSDART00000166607

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062317 lncRNA upstream 42481 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 50563 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062313 lncRNA upstream 57645 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00064805 lncRNA upstream 61878 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00064806 lncRNA downstream 285303 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062339 lncRNA downstream 507021 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00062351 lncRNA downstream 728437 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 1168133 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 1342474 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062319 mRNA upstream 4828 6822592 ~ 6845993 (+) False XLOC_031815
TCONS_00062320 mRNA upstream 4828 6828167 ~ 6845993 (+) False XLOC_031815
TCONS_00062318 mRNA upstream 41223 6802582 ~ 6809598 (+) True XLOC_031814
TCONS_00062316 mRNA upstream 42311 6802142 ~ 6808510 (+) False XLOC_031814
TCONS_00062314 mRNA upstream 50434 6797520 ~ 6800387 (+) False XLOC_031813
TCONS_00062326 mRNA downstream 2347 6924637 ~ 6962195 (+) False XLOC_031818
TCONS_00062327 mRNA downstream 2347 6924637 ~ 6967588 (+) True XLOC_031818
TCONS_00062328 mRNA downstream 201690 7123980 ~ 7132026 (+) False XLOC_031819
TCONS_00062329 mRNA downstream 201780 7124070 ~ 7133531 (+) True XLOC_031819
TCONS_00062330 mRNA downstream 318113 7240403 ~ 7245216 (+) True XLOC_031821
TCONS_00062321 other upstream 18200 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062305 other upstream 577344 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 634911 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 1166526 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 3000579 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062341 other downstream 531065 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 543983 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 577838 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062355 other downstream 1168287 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 1392233 8314523 ~ 8321969 (+) False XLOC_031838

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_05253329_05288232.mRNA True 4213 mRNA 0.48 29 CI01000024 5252438 ~ 5288232 (-)