Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062326 |
| length | 1437 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 11 |
| gene id | XLOC_031818 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 6924637 ~ 6967588 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0000186 | activation of MAPKK activity | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004709 | MAP kinase kinase kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-386 | Predicted to enable MAP kinase kinase kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in centronuclear myopathy 6 with fiber-type disproportion. Orthologous to human MAP3K20 (mitogen-activated protein kinase kinase kinase 20). |
| ensembl_id | ENSDART00000065551 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062325 | lncRNA | upstream | 23954 | 6894228 ~ 6900683 (+) | True | XLOC_031816 |
| TCONS_00062317 | lncRNA | upstream | 116297 | 6802528 ~ 6808340 (+) | False | XLOC_031814 |
| TCONS_00062315 | lncRNA | upstream | 124379 | 6799291 ~ 6800258 (+) | True | XLOC_031813 |
| TCONS_00062313 | lncRNA | upstream | 131461 | 6789659 ~ 6793176 (+) | True | XLOC_031812 |
| TCONS_00064805 | lncRNA | upstream | 135694 | 6786638 ~ 6788943 (+) | False | XLOC_031812 |
| TCONS_00064806 | lncRNA | downstream | 245398 | 7207593 ~ 7208629 (+) | True | XLOC_031820 |
| TCONS_00062339 | lncRNA | downstream | 467116 | 7429311 ~ 7435700 (+) | True | XLOC_031826 |
| TCONS_00062351 | lncRNA | downstream | 688532 | 7650727 ~ 7652412 (+) | True | XLOC_031831 |
| TCONS_00062354 | lncRNA | downstream | 1128228 | 8090423 ~ 8093799 (+) | False | XLOC_031833 |
| TCONS_00064807 | lncRNA | downstream | 1302569 | 8264764 ~ 8271403 (+) | True | XLOC_031837 |
| TCONS_00062322 | mRNA | upstream | 2347 | 6850821 ~ 6922290 (+) | False | XLOC_031816 |
| TCONS_00062323 | mRNA | upstream | 2347 | 6850853 ~ 6922290 (+) | False | XLOC_031816 |
| TCONS_00062319 | mRNA | upstream | 78644 | 6822592 ~ 6845993 (+) | False | XLOC_031815 |
| TCONS_00062320 | mRNA | upstream | 78644 | 6828167 ~ 6845993 (+) | False | XLOC_031815 |
| TCONS_00062318 | mRNA | upstream | 115039 | 6802582 ~ 6809598 (+) | True | XLOC_031814 |
| TCONS_00062328 | mRNA | downstream | 161785 | 7123980 ~ 7132026 (+) | False | XLOC_031819 |
| TCONS_00062329 | mRNA | downstream | 161875 | 7124070 ~ 7133531 (+) | True | XLOC_031819 |
| TCONS_00062330 | mRNA | downstream | 278208 | 7240403 ~ 7245216 (+) | True | XLOC_031821 |
| TCONS_00062332 | mRNA | downstream | 287336 | 7249531 ~ 7280299 (+) | False | XLOC_031822 |
| TCONS_00062331 | mRNA | downstream | 287336 | 7249531 ~ 7280299 (+) | False | XLOC_031822 |
| TCONS_00062324 | other | upstream | 44588 | 6879927 ~ 6880049 (+) | True | XLOC_031817 |
| TCONS_00062321 | other | upstream | 92016 | 6832046 ~ 6832621 (+) | True | XLOC_031815 |
| TCONS_00062305 | other | upstream | 651160 | 6271867 ~ 6273477 (+) | True | XLOC_031808 |
| TCONS_00062300 | other | upstream | 708727 | 6215794 ~ 6215910 (+) | True | XLOC_031807 |
| TCONS_00062297 | other | upstream | 1240342 | 5684181 ~ 5684295 (+) | True | XLOC_031803 |
| TCONS_00062341 | other | downstream | 491160 | 7453355 ~ 7453831 (+) | True | XLOC_031828 |
| TCONS_00062343 | other | downstream | 504078 | 7466273 ~ 7472497 (+) | False | XLOC_031829 |
| TCONS_00062345 | other | downstream | 537933 | 7500128 ~ 7505016 (+) | False | XLOC_031829 |
| TCONS_00062355 | other | downstream | 1128382 | 8090577 ~ 8093799 (+) | True | XLOC_031833 |
| TCONS_00062362 | other | downstream | 1352328 | 8314523 ~ 8321969 (+) | False | XLOC_031838 |
