RNA id: TCONS_00062332


Basic Information

Item Value
RNA id TCONS_00062332
length 3325
RNA type mRNA
GC content 0.49
exon number 19
gene id XLOC_031822
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7249531 ~ 7280299 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGCTGTGACGTCACGGCGCACTGGATCTCTCGCACTTTTGGGGGAATCTTCTCGTCGGGGTTTGCGTAAACCTGCGATTAACTGAAGTTTGTGAAAGGATTCTTTCGATTTGCAGCACAGACGGGGGCGGATATTCGGTTTTGACGAACTCTTTCATGGATTCTTGGCAAAAACTGAGTGTGTTGTGCAAACTGGGGCACGCGCTCTTGTTTCCATAGAAACGCGCAGGACGCCTTGATACTGCTGTGCCCGCGCGCCGCTCCGATCATACATTAAGACTTCACAAAACACGCAAGATGCCATTTTATGACAACGTTTACTACCCCTACCCGTCAGATCCCCCGGGAACTCATTCCTCAGCAGGGATCCCATCTCTTCTGAGCTCTCCGCAGAGTCAGCCTTCATCCGGCAGCCAGAGCAGACCGGCTCCATCCACCATGTCCGGACCGCTCACTTCTTCCGGAGCCAGCACCAGCATCCCTCCTCCCTATAAATTCAGATCCCGGCGTGAAAATGTGGACTGGCGGCGCATCAATGCTGTGGATGTGGACCGAGTTGCATGTGAAATGGACTTCCAGGCGTTGCAGGAGCACATCAATGCGGTGACGTTCTGTAGCGTGGAGGGCGAGCGATGCCATCGCTGTCAAAGCCCCGTAGACCCAGCATTGATTAAGCTTTTTCGGCTGGCCCAGCTCACCGTGGAGTACCTGCTGCACTCCCAGGATTGCCTCAGCATCAGTCTGCAGGCAGCCGAAGAGAGGCTGCTGGCAGAGGCGAGGGAGAGAGAGCAGATCTGCGTCCAGCTGCAGAAGAAAACCCAGGACGCCAAGGCGTTAAAGGAGGAGCTGAAGCAGAGGAAGAAGATCATTGCTTCCCAGCAAGCTATGTTCAGCGCGGGGATCAGTGCCAATTACCACAAGTGCCAACATTGTGAAAAGGCCTTCATGAACGCCTCTTTCCTTCAAAGTCACATGCAGCGCAGACATCCGTCAGAATTCGACATGAAACTGATGACAGATaatcagaaaaaaattcagaccGTGAAGTTACAAGACGAGATCAACAAACTGCAGGAGCAGCTGACACTGGTCACGTCCCAGATGGAGACCCAGCAGAAAGACTACACTGCAAAACAGGAGAAAGAGCTCATTCAAAGGCAGGAAGAGTTTAAGAGGCAGCTGGAAATCTGGAAAGAAGAAGAGAAAATGCGGATGAACAGCAAAATAGATGAAGTCAAGCAAGCTTGTCAGCGGGACATGGATTCAATGCATCAAAGGAACAGAAACCTCGAAACAGAGCTGCTGAAACTGCAGCAGAAAAATATACAGGAAAGCATGCAGTCGGTACAGACACAGCCCAATGCATCAGCCAGCAATGAACACTGGCAGGAAGTCGTTAAACTCCAACAAAAACTCCACAAACAGGAGGTGAAATGGACTGGGAAAATGCAAAAAATGAAGGAGGACCACGACAGAGAAAAAAGTCTGCTTCAGGAGGAGCTGTGTAAAGTGAGCTCGGCCGTGTCTGAAGGAATGGAGGAATCGCGACGGCAGGTGCAGGAACTGAGCCACAGACTGCAGGAGCAGCAGCAGATCATTACCTCCCAAAACAAGCAGATGAAACAGATCTCGTCAAAGCCGCCAACAATAACAGTACAGCGCGAAGgGGTTTCCACCCCTTCTCCTGAAACTAAAGCGAAGGTGGTGGTCAGTGAGCAGTCCAACTCAGTGCATAAGCTGGATCCTATAGTGGAGCTGTCAGAAGAGGACAAAGattccTCAAGCATCTCTGAAAGTCCGACGGAAAACAGGTCTTGGCAGAAGGAGGTGCAAGAGCTGCTGAAGAATCCGGGTTTGAGGAGAGACATGCGTCTGGCAGCTCAGCACAACCTGGATGATAGACTGCAGAGCTTAGGCATCAAGGGAGTCAGTGGTCTGTCTAAAAACCTCTATAAGAGCAGCATGACCCAGATTATCAGCGATCGGCGGAAAAAACTGGAGGAGGATCCTGTTTATCGAAGGGCACTGAAGGAGATCAGCCATAAACTGGAGCAGAGGGTGAAGGAGAGGAACACAGAGCAGCCTGTCAAACCCAAACTACATGAACAAGTGGTTCAGTCCAGACCCAGATCCAGCAGTTTTCCATCGACAGTAACTCGAGTGATGTCTGGCCCTGCTTCTAAACAGCAAAGAACCCCTCAGCCTGTCCCACGCAGCAGATCCAACGTCCCACACAAGACCTCCACACCACTGCAGCATCGCAGAACTCCTCCATTCAGCTCTGACGAAGACTCgtctgaagaagaagaagaagaggaagaggaagaagaatCATCTGATGAAGAATCCCCTCAAATGCAGAAGAAAACTGTCCTGGTCAACAGCAGCACAGCCAAAGCTCAAAACACTGCTAAAACACAGTCGACGGCTCAGTCGGTGCGTCCCGCTGTGGCCCTGACCAGCGCAGAACCAACAAACGTGACCACACTGAGCGACAGCGACTGGAGCGACGGCAGCGAGATGGAGGAGATCAACCTCTCACAGCTGCACAAACACACCGACCAGAATGGAAACCTGAAGAACGTCACTCACAGTAATGTCAAAGCTCTTGGCAAAAGCCTTGAAAAACAGCTGGCGGCTCGAGGTCCTAAGAAACCAGCAGGGGGCGTTAATACATTTCTGGAAAAGCCAACAGAAGTCAGAAATACAAGGCAGAACGCAAAGAAAGAGCTTAAATactcagatgatgatgatgatgatgatgactggGATATCTCCTCTCTGGAAGATGTGCCCGCTGTGGCCAAACCCACTCAGTGTCCTGTACCCGTCAGAAAGAGCCTGGACAAGAGTCAAGACACCAGCACAAGTGTCTGGGGCTCCTCAACTGGCAAAGGACACAAGCCAgGCCTCACAGACGCAGGAACGGCCAGCACATTGAAGAGCAGTCTCGTGACCGTCAGTGACTGGGACGATTCAGATGAGATTTAATCAAACACAACAGAGCAATACCAAAAACATCCTCATGCTAATATCCTATCTCACTGTAAAATCCAGGACGTGTTGTAGCTCAGGATTAGTGTTGATTCAGGGACAGCAGTGCAAAAACAGCCTTTCACTCTATGAGTTTAACATATCCACAGTGTTAACGgtactttatatcagatataaaGGTACACCTGATGCTAGGAAACATCCAGGGCGTgttgcactttaaaataaaaagattaccTCATACTTTTTTGatagtttatataaaatatagagGTTTTTGTAATGTATAATGAgtaatgatttattaaaatgatttttttaaacatttaaa

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0007275 multicellular organism development biological_process
GO:0035082 axoneme assembly biological_process
GO:0001568 blood vessel development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0060271 cilium assembly biological_process
GO:0021984 adenohypophysis development biological_process
GO:0001947 heart looping biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0042995 cell projection cellular_component
GO:0036064 ciliary basal body cellular_component
GO:0005814 centriole cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0005929 cilium cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040526-1 Predicted to enable metal ion binding activity. Acts upstream of or within several processes, including circulatory system development; plasma membrane bounded cell projection organization; and regulation of signal transduction. Located in several cellular components, including ciliary basal body; non-motile cilium; and nucleus. Human ortholog(s) of this gene implicated in mitral valve prolapse and spermatogenic failure 47. Orthologous to human DZIP1 (DAZ interacting zinc finger protein 1).

Ensembl:

ensembl_id ENSDART00000125912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064806 lncRNA upstream 40902 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 348848 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 441191 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 449273 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062313 lncRNA upstream 456355 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062339 lncRNA downstream 149012 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00062351 lncRNA downstream 370428 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 810124 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 984465 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 1058972 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00062330 mRNA upstream 4315 7240403 ~ 7245216 (+) True XLOC_031821
TCONS_00062329 mRNA upstream 116000 7124070 ~ 7133531 (+) True XLOC_031819
TCONS_00062328 mRNA upstream 117505 7123980 ~ 7132026 (+) False XLOC_031819
TCONS_00062327 mRNA upstream 281943 6924637 ~ 6967588 (+) True XLOC_031818
TCONS_00062326 mRNA upstream 287336 6924637 ~ 6962195 (+) False XLOC_031818
TCONS_00062336 mRNA downstream 42288 7322587 ~ 7390458 (+) True XLOC_031823
TCONS_00062337 mRNA downstream 133916 7414215 ~ 7415343 (+) True XLOC_031824
TCONS_00062338 mRNA downstream 141599 7421898 ~ 7427512 (+) True XLOC_031825
TCONS_00062340 mRNA downstream 164600 7444899 ~ 7452559 (+) True XLOC_031827
TCONS_00062342 mRNA downstream 185924 7466223 ~ 7531427 (+) False XLOC_031829
TCONS_00062324 other upstream 369482 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 416910 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062305 other upstream 976054 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 1033621 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 1565236 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062341 other downstream 173056 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 185974 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 219829 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062355 other downstream 810278 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 1034224 8314523 ~ 8321969 (+) False XLOC_031838

Expression Profile

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