RNA id: TCONS_00062329


Basic Information

Item Value
RNA id TCONS_00062329
length 2099
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_031819
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7123980 ~ 7133531 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGTGATCTCCAAAGTTACTGAAGTACGGAAATAACATACTTTTGCAAATTAAAGTCAAACGCGCAcgattattttaatgtatacataATATAAACCCTCGTCACGGTCTTGTTTTGTAAACTTAAATTAtagaaacattttattaaataaacagcgCATTTTACTTGTGTCAccaaactgtatttttaacaaCTCACAAGattataaactgttttaaaactTTCGACAAAGCTTACTTTTTAAATCTCTGTAGTGTAAACAGAGACAGACCACACACAGACTGGGATTCAGGCTGAGAGAGACGGAGATCCGCCATTGCGGTGGTAACGGTAGTTTCTGTGTCCCGTCAGCGTCAAACTGTAAATAAAGTCACGATATCGACACATTTACGTTAAAGCGACGTTTAATACCACCTAAAGCAGCGAGGACATCTTTGTGAAATGATTAAGCAACGGATCTCTGTATCTCTGCAAACAAATCCATGGTCTGCATATGGATGATGTAGTGCACTTACCATGAACACCAGCAGCAATGAAACCTCCCTGGCGAACACCACAGATGTGGAAAACCGCAGCGCCTGGATCCTGGAGTCTGTCATCATATTAGCCATTGCCGTGTTTGTATGTCTGGGCAATCTGCTAGTTGTGCTGACTCTTTATCGGAAGCCGTATCTATTAACGCCAAGCAATAAGTTTGTGTTCAGCCTTACGCTTTCCAACCTCCTGTTGTCTGTTCTGGTTCTGCCGTTTGTCGTGGCCAGTTCTGTTCGTGGAGAATGGCTGTTTGGTGTTGTATGGTGCAACTTCTCGGCTCTGCTATATCTGCTCATCAGCTCTGCCAGCATGCTCACGTTGGGAGCCATTGCCATTGACAGGTACTACGCTGTTCTCTTCCCAATGGTCTACCCCATCAAGATCACCGGTAATCGAGCATCGCTGGCTATCGTCTACCTGTGGCTTCACTCTCTTTTAGGTTGCCTTCCTCCTCTTTTCGGCTGGTCCACCTTCGAGTTCGACCCCTTCAAGAAGACCTGCACTGTGGCCTGGTATCGTGAGGTCAGCTACACTGCATTCTGGGTAGTGTGGTGCTGTCTGGTCCCCCTGTCCGCCATGCTCATATGCTACGGCCTAATCTTTCGTGTTGCACGACACAAAGCTCGTAAAGTGCATTGTGGGACGGTTGTCATCGTTCAATCGTCATCCAATCGAAATGGACGCAAAAACTCCACCGCCTCGGTTTCCTCCATTGGTAGCCGCAAAGGTTTAATCTACGCCGGCAGCCAGTGTAAAGCATTGGTTACTATTTTGGTGGTCATTGGGACTTATTTGATGACATGGGGGCCGTATGTGGTTGTGATCTGCACTGAGGCCTTATGGGGGAGAGGAAGTGTGTCATCCTGTTTGGAGACCGCGGTGTCCTGGCTGTCCTTCATCAGTGCGGCTTGTCATCCTCTTATATACGGGCTGTGGAATAAGACCGTGAGGAAAGAACTACTGGGCATGTGCTGCACTGATCACCACTACAGGGAATCATTCGTTAGTCGCCATAGGAAGAACCGCCTTTTTAGCATCTCCAACCGAATCACAGATCTTGGCATGTCTCCGCACCTGACGGCTGTGTTGGCCGGAGGAGGACAGCTTTTAGGAGCTGGCAGCAGCACAGGTGACACTGGCTTCAGCTTCTCCCAGGACTCAGGGACAGACACCATGTTGCTGGATAATTATTCTGAAGGGGCAGAAAACTCACACTACTCTGCTTTATTCAACAAGCGCAGGAGTTCAGTCATGTTTGAGGACCAGGTGGAACCGCAGATGAAAGGGGAGGAGGAGTCTCAGCAGTTGAAGGCGGAGCTTCATCAGGTGATTGACAGTTTCGCCTCCAGCATGGCGAAGGCCATCGAGAGTGACGCTAAACTCCAGCTGTTCAGTAGCGAGACTCAGATGGACAGATCTTCATCATGTCGAGCCGCACAAAGAGGCTCacgacagacggacggacagagagCTCGACTACAGAGTATAGACGAAGGCATCGGCGCTGATGACAGAGATCAAGACCACGAGGACGATATCGAGGAAATATGCGcataaattaat

Function

GO: NA

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04030 G protein-coupled receptors

Ensembl:

ensembl_id ENSDART00000151311

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062325 lncRNA upstream 223387 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 315730 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 323812 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062313 lncRNA upstream 330894 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062312 lncRNA upstream 335127 6787035 ~ 6788943 (+) False XLOC_031812
TCONS_00064806 lncRNA downstream 74062 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062339 lncRNA downstream 295780 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00062351 lncRNA downstream 517196 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 956892 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 1131233 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062327 mRNA upstream 156482 6924637 ~ 6967588 (+) True XLOC_031818
TCONS_00062326 mRNA upstream 161875 6924637 ~ 6962195 (+) False XLOC_031818
TCONS_00062322 mRNA upstream 201780 6850821 ~ 6922290 (+) False XLOC_031816
TCONS_00062323 mRNA upstream 201780 6850853 ~ 6922290 (+) False XLOC_031816
TCONS_00062320 mRNA upstream 278077 6828167 ~ 6845993 (+) False XLOC_031815
TCONS_00062330 mRNA downstream 106872 7240403 ~ 7245216 (+) True XLOC_031821
TCONS_00062332 mRNA downstream 116000 7249531 ~ 7280299 (+) False XLOC_031822
TCONS_00062331 mRNA downstream 116000 7249531 ~ 7280299 (+) False XLOC_031822
TCONS_00062334 mRNA downstream 116032 7249563 ~ 7280299 (+) False XLOC_031822
TCONS_00062333 mRNA downstream 116032 7249563 ~ 7280299 (+) False XLOC_031822
TCONS_00062324 other upstream 244021 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 291449 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062305 other upstream 850593 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 908160 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 1439775 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062341 other downstream 319824 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 332742 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 366597 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062355 other downstream 957046 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 1180992 8314523 ~ 8321969 (+) False XLOC_031838

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_05125128_05131366.mRNA True 1592 mRNA 0.51 5 CI01000024 5125123 ~ 5131366 (-)