RNA id: TCONS_00065439


Basic Information

Item Value
RNA id TCONS_00065439
length 3730
RNA type mRNA
GC content 0.44
exon number 19
gene id XLOC_033415
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 5920665 ~ 5942776 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTTAAAGTGCGAAATGACTGTATAAACACAGGAAGTGTCTGTCTAAACCCACGAAACACACTTAATGCAGTCTATTAGTGCGACAGGATGGGCTCCAGAGCACTGCCTCTCATCATCTGTCTGATGTCCTTCACTCATTCTCAACGAAATCAAAATTTCAGAATTGCAGATGTACCCACACCTACAGTGACGGTGACACCAGACAATGCTGTATTTACAGGAGAGACAGTCCATCTGAAGTGTGAGATTGAGTCTGATCACAGAGACTGGACATATGAGTGGTATACAAACAGCAGAAACAGTGTGTTACAGTCGTCTGATGGTCGGACTGTAAACACAGGCACTATCACTATGAATGaagctgattggtctgatgaggGTCAGTACTGGTGTAGAGGACTCATAGCTGGAAGATCAGTCTCAACACCATCAAGCTCTGCTGCTTTTCTCTCAGTAAAAGCTTTACCCACACCAACAGTGACTGTGACACCAGACAGTGCTGTATTCACTGGAGAGACAGTCAATCTGAAGTGTGAGATTGAGTCTAATCACAGTGACTGGACCTATGAGTGGTATCAATGGAACCAGATGAACTATTACAGTGTGTTACAGTTGTCTGACCATCACACAGTAAACAGAGACACTCTCACTATCACTGGAACTACATGGTCTGATGGTGGTTGGTACACATGTAAAGGACACATAAGATCAGTCTCAACACAATTAGGCTCTGAATTTTCTCTCTCAGTGAATGATGTTCCCACACCTACAGTTACTGTGACACCAGACAGTCCTGTATTCACTGGGGAGACAGTCAATCTGAAGTGTGTAATAACACCTAAAAATTTTAACTGGAGGTACGTGTGGTATAAGGGCAGCATAAAAAATGTGTTACGGCTGTCTCATCTCCACACTGTGGACAGAGACACTCTTACTATTAGTGAAGCTGCTGGGTCTGATCAGGGTCATTACTTGTGCAAAGGACTCATAGATGGAAGATCAGTCTCAACACAATTAAGCTCTGCAGTTTCTCTCTCATTGAAGGCTTTACCCAAATCTACAGTGACTGTGACACCCGACAATGATGTGTTCACTGGAGAGACAGTCAATCTGAAGTGTGAGATAACACCTTATTACAGTAGCTGGAGATATGAGTGGTATAAGGACAGCACAGACAGTGTGGTACAGTTGACTCATAATCACAATGTATACAGGGACACTCTCACTATCAGTAGAGCTGCTGAGTCTGATCAGGGTCAGTACTGGTGTAAAGGACTCATCAGATCAGTCTCAACACAATCAAACTCTGCTGTTTCTCTCTCAGTAAAGGCTTTACCCAGATCTACACTGACTGTAACACCAGCCAATCCTGTATTCACGGGAGAGACAGTCAATCTGACCTGTGTGATAACAACTTATTACAGTATCTGGAGATATTTCTGGGATAAAGACGACGGTGTGTTGCATTTGTCTCATCGTCACAGTGTAAACAGAGACATTCTCACTATTAGAGCTGCTGAGTCTGATCAGGGTCAGTACTGGTGTTGGGGAGAGATATATGGAAGATCAGTCTCCACACAATCAAGCACTGCTGTTTATCTCATTGTAAAAGCTTCACCCAGATCTACCGTGACTGTGACACCAGACAGTGCTGTATTCACTGGAGAAACATTCAATCTGAAGTGTGTGATTGAGTCTGATCACAGTGACTGGACATATGAGTGGTATGCAGACAGAAACCGTGTAAAGTTACAGTCTGATGGTCATTACACTGTAAACAGAGACACTCTCACTATCAGAGGAGCTGCTGAGTCTGATCAGGGTCAGTACTGGTGTAAAGGATTCATAGATGGAAGATCAGTCTCAACACAACCAACATCTGTTTATCTCACTGTTAAGGATTTAAAGCCAAAGCCTGAACTCAGATCAGATCCTGCAGGACCTGCACTGACTGGAAACACAGTGACTTTGACCTGTAACACTGATCTGTCCACCGGATGGGACTTTTACTGGTACAAAAACACACAAGAGTCTGAGATAAAGACGACAAGAACAAACTCCTACAGCATGAAGATTGATTCATTGTCTGATGGAGGCCAGTACTGGTGTAGAGCTGGAAGAGGAGAACCAGTCTATTACACACAATACAGTGATGAACTGACACTCAGTGTTACAGAGAGTCCTAAAGCTGTGGCGATAATCCAGCCTGATGAACGTGTGTTCAGAGGAGAAACAGTCACTCTCAGATGTGATATAAAGTGGGGAGGAAACACTGAGTGGACATACAGATGGGAAATAGAGCAAACAGACCACTATAACAAATATTATAACCAGTATAATCAACATAAAAACAATGTGAGCCGGTGCTCAGCACAAGAGTTGAAGATCAGCCTTGTTGAGGTCTTTCACCGTGGTAATTACAGCTGTACAGGACAGATGAACACTCAGATCTCTCAGCGCAGTGATCCTGTTGCTCTGACTGTGTAttcagATGAAGCTCAGGCAGCAGTGCAAGTGTCTCCACAGCCGTGGCTCACTGAAGGACACTCGGTGACTCTGATCTGTGAGGTTCCAGGCTCCTCTACAGGCTGGACGTTCAGCTGGTTCAGAGATGCTGATCATCTGTCAGACAGCAGCAGAGGAGCTGGAGGCTCTTACACTCTCAGTCCTGCTGCTCTACAGCACACAGGATTTTATACGTGCAGAGCAGAGAGAGGAGAACCAGCCTATTCCTCACAGAACAGCAGCGCACAGCCACTGTGGGTCACTGGTGTTTCTGCTTCAGTGCGTCTGGTGCTCAGGCCCAGCAGAAGTCAACACTTCTcctctgactctctctctctgagcTGTGACTCTGCTGGATGGACAGTGagaagatacacacacacaaacacacaagattGTTCAGCACAAACAGGATCTACATGTGGGATCCAGTCTCTCAGCACATCTGACACTGGAGTTTACTGGTGTGAGTCTGACTCTGGAGAGAAACGCCATCCTCTGAACATCACTGTACATGATGGTGCTGTGATTCTGGAGAGTTCTGCTGATCCTGTGATTGAGGGAGAAACTCTGACTCTACACTGTTTACATCGATCTACAAACTCCTCCATCCTCACAGCTGATTTATATAAAGACGGATCACTGATCCCGAATCAGACGACAGGAGAGATGAACATCCCTAGCTTCTCAAAGTCTGATGAGGGTTTTTACTACTGTAAAACAGAGAGAGGAGAGTCGCCGCACAGCTGGATCTCAGTCAGAGCTTCAACTTCACTTTCTCTTCTGGTCATCTGTGTTTCTGTGGCATTGAGTGTTTTTTTGCTGCTCCTCATCTTACTGGTTCTGTTGCTGAGACACAAGGAGGAAAAAGATCCACACTGTGGAGTTCAACAAACTTTGGAATCAAACCGATCTGGAGAATTTCAGACGCAAAACTCAACTCTACAGTCTTGTTCTTACCACATTTATGATGATGTTAGCGCATTCAATAATGTAGAAGAAGAGCCAGTGGAAGATGTGACACATTCAAAGAAAAAGATGCCCATATATGAAGATTTTAATACTGCAGTGACCTACACAGAAATCAATGTAAAGGGCAAAAAGAAAACCACAGGCAAAGgTGCTGAATTTGCTGATGTTCTGATTGAAATGAAGTCTAAGGAAATACATGGTAAATAAAGAGATGTTCTGGAATGTTGTTACAGAACACGTGAAAATGAAGT

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-160113-14 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in female organism.

Ensembl:

ensembl_id ENSDART00000173208

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068547 lncRNA upstream 93165 5826581 ~ 5827500 (+) True XLOC_033406
TCONS_00068544 lncRNA upstream 102289 5814145 ~ 5818376 (+) False XLOC_033405
TCONS_00068548 lncRNA downstream 1034 5943810 ~ 5947127 (+) True XLOC_033416
TCONS_00068770 lncRNA downstream 35882 5978658 ~ 6243430 (+) True XLOC_033427
TCONS_00068549 lncRNA downstream 111069 6053845 ~ 6057362 (+) True XLOC_033428
TCONS_00068550 lncRNA downstream 306616 6249392 ~ 6252661 (+) True XLOC_033429
TCONS_00068771 lncRNA downstream 1322906 7265682 ~ 7275388 (+) True XLOC_033443
TCONS_00065438 mRNA upstream 7136 5913030 ~ 5913529 (+) True XLOC_033414
TCONS_00065437 mRNA upstream 8291 5911670 ~ 5912374 (+) True XLOC_033413
TCONS_00065436 mRNA upstream 9676 5910467 ~ 5910989 (+) True XLOC_033412
TCONS_00065435 mRNA upstream 10989 5909271 ~ 5909676 (+) True XLOC_033411
TCONS_00065434 mRNA upstream 12082 5908077 ~ 5908583 (+) True XLOC_033410
TCONS_00065441 mRNA downstream 5607 5948383 ~ 5948685 (+) True XLOC_033417
TCONS_00065442 mRNA downstream 12384 5955160 ~ 5956028 (+) True XLOC_033418
TCONS_00065443 mRNA downstream 14161 5956937 ~ 5957597 (+) True XLOC_033419
TCONS_00065444 mRNA downstream 16427 5959203 ~ 5959818 (+) True XLOC_033420
TCONS_00065445 mRNA downstream 17715 5960491 ~ 5961503 (+) True XLOC_033421
TCONS_00065428 other upstream 350471 5569548 ~ 5570194 (+) False XLOC_033402
TCONS_00065420 other upstream 730769 5189778 ~ 5189896 (+) True XLOC_033396
TCONS_00065416 other upstream 921394 4998793 ~ 4999271 (+) True XLOC_033393
TCONS_00065411 other upstream 954328 4966092 ~ 4966337 (+) True XLOC_033390
TCONS_00065402 other upstream 1038978 4880423 ~ 4881687 (+) False XLOC_033375
TCONS_00065457 other downstream 755197 6697973 ~ 6698091 (+) True XLOC_033435
TCONS_00065458 other downstream 813430 6756206 ~ 6800689 (+) False XLOC_033436
TCONS_00065469 other downstream 1105480 7048256 ~ 7093901 (+) True XLOC_033440
TCONS_00065483 other downstream 1829389 7772165 ~ 7772378 (+) True XLOC_033453
TCONS_00065484 other downstream 1836187 7778963 ~ 7779176 (+) True XLOC_033454

Expression Profile

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