RNA id: TCONS_00067369


Basic Information

Item Value
RNA id TCONS_00067369
length 1014
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_034602
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 17400445 ~ 17457872 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGCTTGCAAGATTGTTTTACCTTCTTTCTCCTCACATTTGCATATGGGACCtgtgaagaagattttattcatCAGCAGCCACTGGTAGTTGCTGAACTTGGAAGCCGTGTGACTTTACCCTGTTTTCACTCTGATGACTATGTAACTACTGTTTCATGGACTAAACATTCATCTGGCAAGAAACCACTTCTTATAGCATATTCAGATTTCAACTCAGAAAGAGTTACATATCAAAATGCCTTCAACAACACTAATCGATTCTTTATCACAATTGCAAGTGGCTGTTATAATTTAACTATCCTTCACTTGGAGAAAGAAGATTTTGCAAATTACTATTGTGTTAAGGATTTCTTGAACAGGTTAATGTTTGGAGAAGGAACGATTCTGCTGCGCAAAGaaactgacagAATTAGCAGCACGTCTGTTATCCAGCAGCCTGTGTCTGACAGActtcatccaggagattcagtgACCCTGCAGTGTTCGGTCAGCAGTCACATCTGTGCTGGACATTACAGAGTCTACTGGTTTAAACACTCATCAGGATATTCTCAACCAGGGATCATTTACACTCATGATAACCGGAGCGATCAGTGTTTGAAAAGTTCAGAGAAGAGCTCTTTTGTTCAGAGTTGTGTTTATAGTCTCTCTCAGACTGAACTCACTACATCTGATGCTGGAGTTTATTACTGTGCCGTTGACACATGTGGGAAGATACACTTTGGAAATGGGACCAAGTTGACTATTGAAGCTTCCTTCTTTTGGAATCCAGTTGCTGTCATCCTGTTTACAATAAGTGTAACATCCATTGTTGTGAACATAGTTTTGGTGATTCAAAAGAATCGGAGAAAAGAAACTACAGAACATCTCAGAAGCCAGATAAATCAGATTGAAACAGATGACCTAAATTATGCTGCCCTGCACTTTTCCAAAACAAAGCCAACCACCTCGAGAAGATCTTCAATGAAAACCATCCAGGAAACCATTTATTCAGAGACCACAGTACATTAG

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-001106-8 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000043689

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00067366 lncRNA downstream 20344 17358084 ~ 17380310 (-) True XLOC_034601
TCONS_00069168 lncRNA downstream 145042 17222537 ~ 17255612 (-) False XLOC_034596
TCONS_00069169 lncRNA downstream 145043 17251202 ~ 17255611 (-) False XLOC_034596
TCONS_00069167 lncRNA downstream 1051565 16347500 ~ 16349089 (-) False XLOC_034591
TCONS_00068672 lncRNA downstream 1177550 16222045 ~ 16223104 (-) True XLOC_034589
TCONS_00068673 lncRNA upstream 159699 17575791 ~ 17576097 (-) True XLOC_034605
TCONS_00067389 lncRNA upstream 279134 17695226 ~ 17708630 (-) True XLOC_034612
TCONS_00067396 lncRNA upstream 394211 17810303 ~ 17813414 (-) False XLOC_034614
TCONS_00067415 lncRNA upstream 1226922 18643014 ~ 18650779 (-) True XLOC_034624
TCONS_00067420 lncRNA upstream 1291891 18707983 ~ 18712554 (-) False XLOC_034626
TCONS_00067365 mRNA downstream 63309 17332156 ~ 17337345 (-) True XLOC_034600
TCONS_00067364 mRNA downstream 63421 17332123 ~ 17337233 (-) False XLOC_034600
TCONS_00067363 mRNA downstream 103498 17295053 ~ 17297156 (-) True XLOC_034599
TCONS_00067361 mRNA downstream 132543 17266904 ~ 17268111 (-) False XLOC_034598
TCONS_00067373 mRNA upstream 4233 17420325 ~ 17443332 (-) False XLOC_034602
TCONS_00067374 mRNA upstream 5190 17421282 ~ 17425545 (-) False XLOC_034602
TCONS_00067376 mRNA upstream 8287 17424379 ~ 17457872 (-) False XLOC_034602
TCONS_00067375 mRNA upstream 8287 17424379 ~ 17457872 (-) True XLOC_034602
TCONS_00067377 mRNA upstream 49919 17466011 ~ 17499986 (-) True XLOC_034603
TCONS_00067360 other downstream 136345 17261616 ~ 17264309 (-) True XLOC_034597
TCONS_00067355 other downstream 558538 16841999 ~ 16842116 (-) True XLOC_034594
TCONS_00067347 other downstream 1051222 16348739 ~ 16349432 (-) True XLOC_034591
TCONS_00067339 other downstream 1219062 16176847 ~ 16181592 (-) True XLOC_034585
TCONS_00067338 other downstream 1286226 16114300 ~ 16114428 (-) True XLOC_034583
TCONS_00067385 other upstream 225096 17641188 ~ 17645750 (-) True XLOC_034610
TCONS_00067399 other upstream 446333 17862425 ~ 17862540 (-) True XLOC_034615
TCONS_00067401 other upstream 830945 18247037 ~ 18247691 (-) True XLOC_034617
TCONS_00067412 other upstream 1147672 18563764 ~ 18569333 (-) True XLOC_034622
TCONS_00067426 other upstream 1410882 18826974 ~ 18827973 (-) True XLOC_034629

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000105_03475664_03479347.mRNA True 742 mRNA 0.43 3 CI01000105 3475566 ~ 3479481 (+)