RNA id: TCONS_00068007


Basic Information

Item Value
RNA id TCONS_00068007
length 3801
RNA type mRNA
GC content 0.43
exon number 22
gene id XLOC_034967
representative False

Chromosome Information

Item Value
chromosome id NC_007118.7
NCBI id CM002891.2
chromosome length 74282399
location 40122918 ~ 40145097 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGATGGCGGAGGAAAAAGCTGTCAACACAAACTTACGATTGTTGGATAAATAAGAGAAAGTGGATCCCTGAAGTAATGCGCTCTGTGAAGAAAATAACTAAAGAAGACACTTGGAGGTCTGATGATTTAAAAGTGCACATTCAGGCACACAATGAGGAGAGCAGAAGAAGATCCAAGCGAGTAGAGGAGCACAGAAAACACAGGGATGGAGAATCAGAGGATCGCAGACACAGAGATCCTGACCGAGATCcaaggagagagaaagaaaagcgGAGAGAACGAGAGGGGAGTAAACACAGAGATCCAGAGAGGGACAGAAACCAGGATATCAAACGGGAAGATGTCAGGGAGGAtagacacaaagagagaaggagagagcgGGAGAAAGCGAGACATGGGGATGGAGATGAAGATGAGAAAAGATATAATAGAGATGATAAGGAAAATGGTGAAAGACGGAGGGATAGAGAGAAAGACAGGAATGTGGACATGTACAATCAGGAGGACAAGGAAAGAGAAAGAGATAGAAGGAGGGCTGAGAGAGCTCGAAGGAAAGAGGAGAGAGGAGAAGGAGAAAAAGAGGAGAGGGAAAGAGACAAAGAAAGAGAACGAGAGAGAAGAGAAAGACACAGAGCAAGAGAAAGTGACCGGTATAGACTTGAATATGATGAAAAGCAAAGAGAAGGAGAAAGGCGAGAGAGACACAGCGACAAAGAACACTCTGGGCACAAAGAAAGAGAACACAGAAGGGATAGAGAAGATAAAGAGAGGAGGAGAAGAGATAAAGAAAGTCATATGGCAAAAACAAGTCACTCTCGAGAAGCTGAACACCATCGGCAGGAGCTGAAAGACTCAAAGGATTTTCACGGCATCAAAGATGGAGAAAGTGAAAAGGCAAGGGAAGAGAGAGAGCGGCGGCATGAAAGAAAGCACAAGGAAGCTTCAGACTCCAAAAGGAGTGACAGAGAGCAGAAACAGGATTTATCAGGCCATGACCTGAATGCAAGGATAAGCAGAGACAAAGAGGAAACTACCAAGAGACCTCAGTTAACATGGAGGTCTGATCAAGCTGAAACAAGTGATCCAGAGGTAGAGAATGAAGAAACGGAACAGGACAAGGAATCAAGCAAAGATGATCGTAATCATTATGAGGAAGATTTTGAGgATTATGAGGAGGACTTTGAGGATGtagatgaagatgaggatgataAAGCGGAGGAGGATGAGAAAGAGGAACATGAGAATAAAGCAAGAGAGGATAAGAGAGAGCTGAGCCCCAGGAGAAGACAAGAGATTGAAGCCATCCAGAGAGCCATGGATGAAGAAAACGAGAGAATCTACTCTGCAAGATCAAAGCCTTCAACTGCAGACTCCACTGTCACCCAGAGAGACAGGCTCTCGAACGCAAATCAAACACGTGGCACAATTATTGATTTTGTGTCAGCAAAGCAACGAGAGATCAGCCAGAAAGTGGCCAGGAAGCAAAAGAAGCGCAGTGAGGAACTTCTGCGCCTGATTGATTTAGATTTCTCCATCACCTTCTCTATGCTGGACCTTCCACCTGTCAATGAGTATGACATGTACATCAAGAACTTTGGAACAGCCAATACAAAACAGGCTTATGTGCAGTGCAATGAAGACAGCACTGATCGAGATATACAAACAGAAGATGTTGAAATGACAGACAAATGGACTCAACACCCACCAGAAGCAAAATCAGCATGTGGTGGGTCTACAGGGACTCAGGCCAATGCAGTGGAATCCATAGCAAGAACATCTACTGATTCTAAACGCCTGACTACATTTTTACGTTCTGCTGCACAGGTGATGGCTGTTCTGGTCGAGGAGAACATGGCACAAAGTAATTCTGTCAAAAAACTTTGCTCTAAAACTGATGCTTTGTCCTTCAGTGACGGGTGCATTCAACTCAACACCAAACTTCCATTTCTGAATGGTCGGCAGGTGAGTCTACTGCAGTTTTCTCAGGTCCAAAGACAGACTCTTCTGTCTGTTCATCCTCCGTCTTCCAAAAACAGTTCTGTTCGCCTTGACAGTGAGACTGTTGTCTGCGTGTGGAACATCTGGGAACCATCCAGACCCCAAAAAATTCTTCTTTATGAATCTGAAGTGAAGTGTTGTTGTTTCAGTCCTGGTAAAGTTACATTAGTGTTTGCTGGTACAGCAGTGGGCTCAGTGATCGTATGGGACCTCAGAGAACATTCTGGCTCTCACTCCAATTTGGAAATTGGCAAGGAGGTGTGGACGTTGCGCTACCCAACCTTCTCAACAGATGCTGTGCTTTCAGGGGTGGGTCATCTCTCTCCTGTAGTGTCCATTGAACCTGTAATAGCATCTGCTGATATGAGTTCAACGAGCACACTGACTGCAGACATAGAAGAGTGTATGGGATTGTCATTCCAGTTAGGATCTCTGGATGAAAATGGAGTGCTAACTCTCTGGGTTGTGATTGAGCTGCCCAAAGGAAATGATTCTGGATCACAAACAGATCTAGGTCTCAGGCCTGGTGGTAAAGTTAAACTACTCCACAGCTCCTCTTTACAGACCACTGAGAGATTACCTAAAGACACTATAATGGGATTTGGACCATCTGTGAGCCTTCAGTTAAAGTTCCTCCCTTCTGATTCAAATCATTACTTCATTGGCACTAACATGggCCTGGTTAGACATGGTACAAGGCACAGTTTGAAGGTTCTCCCAAAGGTTTACAGATCACAGTCTGATAGCTATAGGCCAGTGGAAGTCACAGCACTGGACTTCAGTCCTTTGGGGGAACCCTTTTTCTTGATTGGCTGCAGTGATGGGTCAGTTCGATTACACTCTGTCCTGAGAGAAGATCCATTGATGGAGTGGGCAGGACGGTCTAGTGGAGCTCCCATTCTGTCTGTGCAGTGGTCTCAGACACGGCCAGCTGTGTTCTGTGTTCTGGATGCTGCCTCTGATCTTCACATCTGGGACCTGACAGAAAAGGATTATGTGCCAGTCATCACCGAGAATATACACAGTGACCGGGTTACAGCCATGGCAGTGTTTGGTGAGCCGgccaaacaaaacacattttctgGCATCGCGCTTGCCAAGCAGTCCGGCAAGGTGGAGATTCAGTATTTCAAGAAGTCACTTACAGTGTCTAGTGCCTCTGACAAAGAAAAAATTGATTCTATTTTGCATGATGCTTTTTTGACACGAGATATGAGATGATATGGAACATCCAAATCAAGAAGATGTCTGTCTGAACATAGATTTAAATTAATATCCTGTCAAAATCCATTATATGCTTGATTATAAAAACACAAAGATTCATCTGAGCTAGTTATACACAGTATGGGCTGACTCAGTGAATGATAGTTCCTTGTTACATCAATAATGTACCTAAAGCTGCAAAACTGTGTATATAACAGCATGAACTGTGTAGGGTGAGAAATGGTCTGTACATATACCAATTTGTTCTGTACACATAACAAATGTATTTCCCTGGCTTAAAATTCATTACTTCTGAAACTTTGCTGACATCAGCTGGAACATGATAGCTTTGTTGCTGTAAGCAGCATTTTGTAAGGTTAGATCAAATGCTAAAGGGAGCACATAAATATGAGCTTTCTGGTCCTCAGGGATATAAAGGCATTATAtcctttttgtattattttacaatatgtgCAGATGAATATTTACACTGTGTAGCATTTAAAAAGGAATGGTCTCTGTTATTTCTTTACTATCGTTGTACTACTGTACTTATTAAtggaattttttaattaaaagacaaTTATATTTAAACTGCA

Function

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

Ensembl:

ensembl_id ENSDART00000173634

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00068002 lncRNA downstream 376896 39745234 ~ 39746022 (-) True XLOC_034964
TCONS_00067998 lncRNA downstream 562036 39553758 ~ 39560882 (-) True XLOC_034961
TCONS_00067997 lncRNA downstream 565624 39553758 ~ 39557294 (-) False XLOC_034961
TCONS_00067990 lncRNA downstream 681868 39437384 ~ 39441050 (-) True XLOC_034958
TCONS_00067989 lncRNA downstream 747157 39373539 ~ 39375761 (-) True XLOC_034957
TCONS_00068011 lncRNA upstream 396199 40541296 ~ 40561374 (-) False XLOC_034968
TCONS_00069276 lncRNA upstream 411939 40557036 ~ 40561701 (-) True XLOC_034969
TCONS_00068014 lncRNA upstream 482328 40627425 ~ 40630652 (-) False XLOC_034970
TCONS_00068015 lncRNA upstream 482549 40627646 ~ 40630670 (-) True XLOC_034970
TCONS_00068018 lncRNA upstream 502113 40647210 ~ 40648846 (-) True XLOC_034971
TCONS_00068005 mRNA downstream 779 40102391 ~ 40122139 (-) False XLOC_034966
TCONS_00068006 mRNA downstream 12778 40108582 ~ 40110140 (-) True XLOC_034966
TCONS_00068003 mRNA downstream 40865 40058757 ~ 40082053 (-) False XLOC_034965
TCONS_00068004 mRNA downstream 40865 40070142 ~ 40082053 (-) True XLOC_034965
TCONS_00068001 mRNA downstream 371378 39744244 ~ 39751540 (-) False XLOC_034964
TCONS_00068009 mRNA upstream 391831 40536928 ~ 40578733 (-) False XLOC_034968
TCONS_00068012 mRNA upstream 415044 40560141 ~ 40578733 (-) True XLOC_034968
TCONS_00068013 mRNA upstream 438842 40583939 ~ 40630698 (-) False XLOC_034970
TCONS_00068016 mRNA upstream 499672 40644769 ~ 40657831 (-) False XLOC_034971
TCONS_00068017 mRNA upstream 499773 40644870 ~ 40656148 (-) False XLOC_034971
TCONS_00067999 other downstream 406845 39715712 ~ 39716073 (-) True XLOC_034962
TCONS_00067983 other downstream 887806 39234995 ~ 39235112 (-) True XLOC_034955
TCONS_00067981 other downstream 986144 39136650 ~ 39136774 (-) True XLOC_034953
TCONS_00067973 other downstream 1315093 38804123 ~ 38807825 (-) False XLOC_034950
TCONS_00067953 other downstream 1478631 38642119 ~ 38644287 (-) False XLOC_034941
TCONS_00068010 other upstream 393473 40538570 ~ 40551054 (-) False XLOC_034968
TCONS_00068023 other upstream 803778 40948875 ~ 40949190 (-) True XLOC_034975
TCONS_00068036 other upstream 1269493 41414590 ~ 41416307 (-) True XLOC_034982
TCONS_00068043 other upstream 1347920 41493017 ~ 41493131 (-) True XLOC_034985
TCONS_00068069 other upstream 2008313 42153410 ~ 42153524 (-) True XLOC_034997

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_11747661_11754397.mRNA True 3648 mRNA 0.42 15 CI01000026 11746800 ~ 11755219 (-)