RNA id: TU205035


Basic Information

Item Value
RNA id TU205035
length 1938
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G151318
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3214900 ~ 3261498 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGCTGTGGTGCGCGgtgcttcctccagctctgctcctcagttccctcctcctctttaacccttgtgttgtcttcccgtcgactaTGCACCATTGGCCAAAATTTACATTTGGGTTcgtctagatttctaggctagtaaGTCGGTCTTATCGGTTAGGCAGCTTACGGACCTCGTCGTCGCTCCAAGATAATGAATCAATTGCTATTACTTCTCACCGTTCTgtctccaaagtattttctgtgttttcaaATTCTACATCCATGATTATCAACCAcagagtaacgtcagacaatctgcttcctgtttacaccgacacacacatgcccagtgtgtgtgaatggtcatgTGCAGGGCTTTAAATGGACTTCtttgatcaccagccaacatggctagtagatttttaaagttaccagccaattAGACTTTTCCCTAGCCTCacgtttgttttagttttttccctAACTAACTTTACTTTAATCTCAGCTCCTCTTGTTTGTTTCCTTCCGTTCGTCTTCTCTGTTTCAGTGTAGCTCGTAATCGATACCTCACGCTCTGAACGTAGCCAACGGTTGTACGACACGTCACGACATACTGCTCATGGAAAATGTACGATCagggggagcgtgcctatgcgtgcctattttttttctaaattaggccctatgttcctacatttctaagatttttttttttttcactgaaaattaggctctatgttcccacagttaccacatttctaagattttttttttccaaaattaggccctatgttcgcACATTTATCAGATTTGagccccctttctcccaatttggtaaccaattacacccaacatattatccagtagcaatggactacagatggactgtaaccctaacatagggccttattttaagaaaaatcttagaaacgtgggaacatagggctgtgggaccattgggctgaccCCGGATCAGTACTACAAGCAGCGTTGTCGGATAAAGATTATGTTTCCAAGccaaacgcacacaaaaacgCCCAAAATCTTTTGGCGGAAAACCGACCAATCTGGCGACATTTCTGCAGCCGGCCGATTCAAACAGATACAGAGTTATTTGCTTCATTCATCACCGGCCAAATCGGCTAGTGACTTTACAATGTTACCCGACAAatcaatttaaagccctggtcatgtgatatgtgatgtcagacgtgttaatacggacagagattagttctgctactggagctgaaactcttgtgtggacggagatcgttttttttgtctcaaaaatgccgcttaaaaatgaaaacgtagCAGCGTAGATGTAGCCTTAACTCTTTTCTATTTATgcagatgtacagtatattgtgtAATGTTACGTGTGAAGGAAAAGTGCCAGTCTTTATTTAAGAATGatgtgatttctttttctttttctttacacTTAAATGTATAATATGCAATCCAATAGTGCCCAGTTTTATAAAACAGGGGACTCTTAGTGTCAGTGATACAGTAGTAGAGTGTGTTGAGACAATATTTTAGTGCGTGAGGTCGTGTTTGTTTCTTGTGTAGTATAGAAAAAAAGATCTCGATAGTTTTTGGACACTATGCAGGATCAGACCTAGTACCCCTATAGGGCACTAATCTGTCTTAGGCTGCCACCTTGTGGACGACATGTCTCATTACACCAACTGTACTGATGCGCAAAGAAAGGAGGGTGTACATTTTGCCTGGGGATCTTTCCATTTCATACATTATTATTCGGATGCATAATTCTTGTGTTGACGAACCCATTCAGATCAATTTCACACGAGTTGTCCAGTCTGAGCTCTTTAGACTAATATCCCAATGTTGgatctgtgtttttttgggggggggggggttctgtgTGATGTGAGAAAATTGCACtttattttgtgtcaaatattttaatttttttttacttattgctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205039 lncRNA upstream 7435 3206573 ~ 3207465 (+) False G151321
TU205043 lncRNA upstream 7435 3206573 ~ 3207465 (+) False G151321
TU205048 lncRNA upstream 7435 3206573 ~ 3207465 (+) False G151321
TU205049 lncRNA upstream 7435 3206573 ~ 3207465 (+) False G151321
TU205050 lncRNA upstream 7435 3206573 ~ 3207465 (+) True G151321
TU205068 lncRNA downstream 60697 3322195 ~ 3322400 (+) True G151330
TU205064 lncRNA downstream 89684 3351182 ~ 3357175 (+) False ldlra
TU205076 lncRNA downstream 152703 3414201 ~ 3414537 (+) True G151336
TU205162 lncRNA downstream 168860 3430358 ~ 3430648 (+) True G151411
TU205165 lncRNA downstream 172597 3434095 ~ 3434380 (+) True G151414
XM_039825767.1 mRNA upstream 110308 3102641 ~ 3104592 (+) True junbb
XM_039824167.1 mRNA upstream 228047 2957932 ~ 2986853 (+) True ubn2b
XM_039824166.1 mRNA upstream 261390 2947411 ~ 2953510 (+) True rpsa
XM_039824165.1 mRNA upstream 273281 2931036 ~ 2941619 (+) True LOC120574090
XM_039823688.1 mRNA downstream 2598 3264096 ~ 3276150 (+) True LOC120573829
XM_039824718.1 mRNA downstream 22110 3283608 ~ 3321386 (+) True smarca4a
XM_039824715.1 mRNA downstream 27712 3289210 ~ 3321386 (+) False smarca4a
XM_039824716.1 mRNA downstream 27712 3289210 ~ 3321386 (+) False smarca4a
XM_039824717.1 mRNA downstream 27712 3289210 ~ 3321386 (+) False smarca4a
TU205031 other upstream 66923 3146504 ~ 3147977 (+) True G151315
TU204936 other upstream 211536 3001899 ~ 3003364 (+) True G151240
TU204708 other upstream 412679 2799469 ~ 2802221 (+) True G151122
TU204669 other upstream 523338 2689720 ~ 2691562 (+) False LOC120574078
TU204682 other upstream 525862 2685103 ~ 2689038 (+) False LOC120574078
XR_005642000.1 other downstream 119789 3381287 ~ 3381386 (+) True LOC120575509
XR_005642001.1 other downstream 121016 3382514 ~ 3382613 (+) True LOC120575510
TU205238 other downstream 397499 3658997 ~ 3663282 (+) True G151471
TU205526 other downstream 1056675 4318173 ~ 4319498 (+) True G151695
XR_005641832.1 other downstream 1076596 4338094 ~ 4346405 (+) False LOC120574173

Expression Profile