RNA id: XM_039824717.1


Basic Information

Item Value
RNA id XM_039824717.1
length 4857
RNA type mRNA
GC content 0.58
exon number 32
gene id smarca4a
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 3283608 ~ 3321386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGAAGCCATGCATGAGAAGGGAATGCCCGACGACCCCCGCTACGCCCAAATGAAGGGCATGGGCATGAGACCAGGGGGACACAGTGGGATGGGACCCCCTCCGAGCCCCATGGACCAACATTCCCAAGGTTACCCCTCTCCGTTGGGAGGCTCAGAGCACGCACCCAGCCCTGTCCCAGCCAACGGCCCTCCCTCTGGCCCCATGATCCCCGGAGGTCCCTCTGGCCCCGGTGCTGGCCCTATGGAGGGCAGCGGGGACCCTAACCAGGGGATGGGTCAACCTAACCGCGGGGGTCCCCAGGGTCCGGGTGGACCCGGCGGCGCGGGCGGTGGACCCGGCGGTGCAGGCGGACCCGCTCCGTTCAACCAGAACCAGTTGCACCAACTCAGGGCTCAGATTATGGCCTACAAGATGCTGGCCCGCAGCCAGCCCTTACCAGAGCACCTGCAGATGGCCGTGCAGGGGAAGAGGCCCATGCCCGGGATGCAGCAGCAGCCGATGCCCAACATGCCGCCTTCTACGGGGCCCGGAGGTGGGCCTGTGGGTGGGCCTGTGGGTGGGCCGGGACCAGCTCAGGCCAACTACAACAGACCACACGGCATGGTAGGTCCTAATATGGCGCCTCCTGGACCTGCAGGAGTTCCCCCAGGTATGCAAGGCCCGCCTACCAACGGACCCCCTAAATCATGGCCTGAAGGGCCGATGGTGAATGCTGCGGCCCCGTCAAACCCTCCCCAGAAGCTGATCCCACCTCAGCCCACGGGCAGACCTTCGCCCGCTCCTCCCTCAGTTCCCCCCGCTGCTTCCCCAGTAATGCCGCCTCAGACGCAGTCCCCGGGACAGCCTGCCCAGCCCCCTCCCATGATGCTTCACCAGAAGCAGAACCGCGTAACCCCCATCCAAAAGCCCCGTGGGCTGGACCCAGTGGAGATCCTCCAGGAGAGGGAGTACAGGCTACAGGCGCGTATTGCTCACCGTATCCAGGAGCTGGAGAACCTGCCGGGCTCTCTGGCCGGTGACCTGCGCACCAAGGCCACCATCGAGCTCAAGGCCCTGAGGCTGCTTAACTTCCAGAGACAGCTGCGTCAGGAGGTGGTTGTTTGCATGCGACGTGACACTGCTTTGGAAACGGCCCTCAACGCCAAGGCCTACAAGCGCAGCAAACGGCAGTCTCTACGCGAAGCCCGCATCACCGAGAAGCTGGAGAAACAGCAGAAGATTGAACAGGAACGTAAACGTCGTCAGAAACACCAGGAATACCTcaacagcatcctgcagcacgCCAAGGATTTCAAGGAGTACCACCGCTCCATCACGGCGAAGCTCCAGAAGGCCACCAAGGCCGTCGCCACCTATCACGCCAACACCGAGCGCGAGCAGAAGAAAGAGAACGAGCGCATTGAGAAGGAGAGAATGCGGAGGCTGATGGCTGAAGATGAAGAAGGCTACCGTAAACTCATCGACCAAAAGAAAGACAAGCGCCTGGCCTACCTGCTGCAGCAGACGGACGAGTACGTggccaacctcactgagctggTGCGCGCGCACAAAGCCGTGCAAGCTctcaaagagaagaaaaagaagaagaaaaagaagAAGCCAGAGACTATGGAGGGTGGCGCTCCCGCCCTGGGACCTGATGGAGAGCCTTTGGATGAGACCAGTCAAATGAGCGACCTACCGGTGAAGGTGATCCATGTGGACAGTGGAAAGATCCTGACTGGGATGGAAGCACCTAAGGCTGGCCAGCTGGAGACCTGGCTCGAAATGAACCCAGGATACGAAGTAGCGCCGCGTTCAGACAGTGAGGAAAGCGGttcagaagaagaggaggaggaggaggaagaggaagaggagcaacCTCATTCCTCTGCAACTCAagcggaggagaagaagaagatccCTGACCCCGACAGTGAAGAAGTATCTGAAGTCGACGTCCTGCACATCATCGAACACGCCAAgcaggatgtagatgatgagtACGGTAATGCAAGTTTCAACCGAGGCCTGCAGTCCTACTACGCCGTGGCTCACGCTGTCACTGAGAAAGTGGACAAGCAGTCCACGCTGCTGATCAACGGGCAGCTCAAGCAATACCAGATCAAAGGTTTGGAGTGGCTGGTGTCGCTTTACAACAACAACTTGAATGGCATCCTGGCTGATGAGATGGGTCTGGGGAAAACCATCCAGACCATCGCCCTCATCACTTACCTCATGGAGTACAAGCGCCTCAACGGGCCCTTCCTCATCATCGTACCTCTCTCAACTCTATCAAACTGGGTCTATGAGTTTGATAAGTGGGCCCCATCTGTCGTGAAAGTCTCCTACAAGGGGTCTCCAGCTGCTCGCCGTGCATTCATTCCCATCTTGCGCAGCGGCAAGTTCAACGTGCTGCTCACCACATACGAGTACATTATCAAAGATAAGCAGGTGCTAGCAAAGCTTCGTTGGAAGTACATGATTGTGGACGAAGGCCACCGTATGAAGAACCACCACTGTAAACTGACCCAGGTCTTGAACACTCACTACTTGGCCCCGCGCCGCCTGCTGCTCACGGGCACTCCACTGCAGAACAAGCTGCCCGAGCTCTGGGCCCTGCTTAACTTCCTCCTGCCCACCATCTTCAAGAGCTGCACCACATTTGAACAGTGGTTCAACGCCCCCTTCGCCATGACTGGAGAGAAGGTTGACCTGAATGAAGAAGAGACCATCCTGATCATCCGACGTTTACACAAAGTGCTCAGGCCTTTCCTGCTGCGCCGACTAAAGAAGGAAGTGGAGGCCCAGCTGCCCGAGAAGGTGGAGTATGTGATAAAGTGCGACATGTCGGCCCTACAGAGGGTTTTGTACCGACACATGCAGGCCAAGGGAGTCTTGCTCACAGATGGctcagaaaaagacaagaagGGTAAAGGTGGCACGAAGACCCTGATGAACACTATCATGCAACTGAGAAAGATTTGCAACCACCCCTACATGTTCCAGCACATTGAGgAGTCTTTCTCTGAGCATCTCGGCTATTCTGGTGGAATCGTGAGTGGCCCGGACCTGTACCGCTCCTCTGGGAAGTTTGAGCTGCTGGATCGCATCCTGCCCAAGCTGAGGGCCACCGACCACAAAGTGCTGCTCTTCTGTCAAATGACCTCACTCATGACCATCATGGAGGACTACTTTGCCTACCGTAACTTCAAGTACCTGCGTCTGGACGGAACCACCAAGGCAGAGGACCGCGGCATGCTGCTAAAGACGTTCAACGACCCGGCCTCGCAGTACTTTGTGTTCCTGCTCAGCACCAGAGCTGGAGGCCTGGGCCTCAACCTGCAGTCGGCCGACACCGTCATCATCTTTGACAGCGACTGGAACCCACATCAGGACCTGCAGGCCCAGGACCGAGCCCACCGCATCGGGCAGCAGAACGAGGTGCGCGTGCTGCGCCTCTGCACCGTCAACAGCGTGGAGGAGAAGATCCTGGCGGCAGCCAAGTACAAACTGAACGTGGACCAGAAGGTCATCCAGGCGGGCATGTTCGACCAGAAGTCGTCCGGCTGCGAGCGTCGGGCCTTCTTGCAGGCCATCCTGGAGCACGAGGAACAGGACGAGGAGGAAGACGAAGTGCCCGATGACGAGACGGTCAATCAGATGATAGCCAGAAGTGAAGAGGAGTTTGAACAGTTCATGCGCATGGATCTGGACAGGCGCCGCGAGGACGCCCGCAACCCTAAGAGGAAACCGCGTCTGATGGAGGAGGACGACATGCCCAGCTGGATTCTGAAAGACGACGCCGAGGTCGAGCGGCTAACTtgcgaagaggaggaggagaagatgtTTGGCCGCGGATCGCGCCAACGCAAGGAAGTGGACTACAGCGACTCGCTCACTGAGAAACAGTGGCTCAAGGCCATAGAGGAGGGAAATCTAGAGGACATCGAGGAGGAAGTGCGTCACAAAAAGACGACCAGAAAGCGCAAGAGAGACCGCGACCACGACGGCGGGCCGGCCACGCCCAGCTCCAGCAGCGGCCGCGGGCGGGACAAGGACGAGGAGGTGAAGAAGGCGAAGAAACGCGGCCGCCCGCCCGCCGAGAAGCTCTCTCCCAACCCTCTGTCCCTCActaagaagatgaagaagatcGTCGACGCCGTCATCAAATATAAGGACGGTAACGGGCGACAGCTGAGCGAGGTCTTCATCCAGCTGCCCTCTCGCAAGGAGCTGCCCGAGTACTACGAGCTCATCCGCAAACCAGTGGACTTCAGAAAGATCAAGGAGAGGATCCGCAGCCATAAGTACCGCAGCCTGAACGACCTGGAGAAGGACGTGATGCTACTGTGTCAAAACGCCCAGACCTTCAACCTGGAGGGCTCTCTGATCTACGAGGACTCCATTGTGCTGCAGTCTGTCTTCACCAGCGTGAGACAGAAGATCGAGAAGGACGACGAGAGTGAAGGGGAGGAAAGTGAGGAAGAGGACGACGACCTGGACGAAGGCTCGGAGTCTGAATCTCGCTCGGTGAAGGTGAAGATCAAGCTGAGCCGGAAAGAAAAGGGGGAGCGTGGAGGGAAAGGACAGCGGCGGCGGGGCCGCGGCGCCCGGGCCAAACCGGTGGTGAGCGACGACGACAGCGAGGAGGAACAGGAAGAGgaGCGTTCGGCCAGTGGCAGCGAGGAGGACTGAAGGAAACCACTCCTGATTGGACCAACGGCCCACTGAGCCCCTTGACTggactttatatattttacttagATACAGCAGGGAGACAGTTGGTGGAAAAGGCCTAGTTTTACCTAGACAAGCTGGTTTTTAGTGAGACAGTTGTATTCTCATTAAAGTACACCATTCATTGAAAACCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030182 neuron differentiation biological_process
GO:0021634 optic nerve formation biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0000185 activation of MAPKKK activity biological_process
GO:0031101 fin regeneration biological_process
GO:0014032 neural crest cell development biological_process
GO:0007417 central nervous system development biological_process
GO:0060038 cardiac muscle cell proliferation biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205061 lncRNA upstream 11606 3243610 ~ 3277604 (+) False LOC120573829
TU205035 lncRNA upstream 27712 3214900 ~ 3261498 (+) False G151318
TU205034 lncRNA upstream 27712 3255949 ~ 3261498 (+) True G151318
TU205049 lncRNA upstream 81745 3206573 ~ 3207465 (+) False G151321
TU205068 lncRNA downstream 809 3322195 ~ 3322400 (+) True G151330
TU205064 lncRNA downstream 29796 3351182 ~ 3357175 (+) False ldlra
TU205076 lncRNA downstream 92815 3414201 ~ 3414537 (+) True G151336
TU205162 lncRNA downstream 108972 3430358 ~ 3430648 (+) True G151411
TU205165 lncRNA downstream 112709 3434095 ~ 3434380 (+) True G151414
XM_039823688.1 mRNA upstream 13060 3264096 ~ 3276150 (+) True LOC120573829
XM_039824835.1 mRNA upstream 33327 3164217 ~ 3255883 (+) True LOC120574496
XM_039825767.1 mRNA upstream 184618 3102641 ~ 3104592 (+) True junbb
XM_039824167.1 mRNA upstream 302357 2957932 ~ 2986853 (+) True ubn2b
XM_039824166.1 mRNA upstream 335700 2947411 ~ 2953510 (+) True rpsa
XM_039826329.1 mRNA downstream 9618 3331004 ~ 3357195 (+) True ldlra
XM_039826330.1 mRNA downstream 47428 3368814 ~ 3384569 (+) True kri1
XM_039826332.1 mRNA downstream 64053 3385439 ~ 3395693 (+) True spc24
XM_039823870.1 mRNA downstream 148079 3469465 ~ 3471015 (+) True foxd7
XM_039824415.1 mRNA downstream 244927 3566313 ~ 3574723 (+) True hmox1a
TU205031 other upstream 141233 3146504 ~ 3147977 (+) True G151315
TU204936 other upstream 285846 3001899 ~ 3003364 (+) True G151240
TU204708 other upstream 486989 2799469 ~ 2802221 (+) True G151122
TU204669 other upstream 597648 2689720 ~ 2691562 (+) False LOC120574078
TU204682 other upstream 600172 2685103 ~ 2689038 (+) False LOC120574078
XR_005642000.1 other downstream 59901 3381287 ~ 3381386 (+) True LOC120575509
XR_005642001.1 other downstream 61128 3382514 ~ 3382613 (+) True LOC120575510
TU205238 other downstream 337611 3658997 ~ 3663282 (+) True G151471
TU205526 other downstream 996787 4318173 ~ 4319498 (+) True G151695
XR_005641832.1 other downstream 1016708 4338094 ~ 4346405 (+) False LOC120574173