RNA id: XM_039826491.1


Basic Information

Item Value
RNA id XM_039826491.1
length 1984
RNA type mRNA
GC content 0.45
exon number 6
gene id tmem45b
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21746130 ~ 21751622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaaacaataaaaccagtaacTATCAGTTGAGAAATGTTACACTATtgtatgtggaaagctaatctgaagaggtgtgttttgattagtgttttgaatgtgtccaggtcagtacagccacggatgtgtatgggtagggagttccagagggagggggctgcaaTGGTGAAAGCTCTGTCACCCCAGgcCTAACGATGGCCAACTTTGGAGGACATGCCATTCCTGGCTCTTTTTTCCTGTTACTTGGCTTTTGGCTAACCGTGAAACACGTTCTCCAACACTACTGGAGGACAAGTCAGCCTAAAGGAAGACACATTATGCCccctttctttaaaaaaatggacTTCTTGGAGGGAGGATTTATAATCTTTGGTTCATTTGTTGGTATTATGATTGAACAGTTTGTGGTGGATGGGCCACATGCCCATCTCTACGACAAAGAGAACAATTCATGGGTCAAGCTGATGAACTGGCAGCACGGCACAATGTATCTGTTCTTTGGGATCTGTGGAATAGCACTGGTTGCCAGTAGTGCATCCAAACTGGTGCCAGCTGGTGTTGACCGCCTTGCTCTCTCCTTGGCTCTTTTTGTTGAAGGGTTTCTGTTTTATCACCACCTGCACAATCGACCCCCTCTGGATGCTCACATCCACTCCCTGCTGCTCGTGCCTGTGTTCAGTGGATCGGCCAGCACCATGTTGGAGGTGTTCATAAGAGACAACATTATTTTGGAGCTGTTAAGAGCATGCCTGTTCATCCTGCAAGGCTCATGGTTCTATGAGATTGGATTTGTACTTTATCCATTAAGTGGACCGGAGTGGGACCTGAAACTGCATGACAACCTCATGTTCATTACTATGTGCTTCTGCTGGCACATAGCTGTGGCCCTGCTTTTAGTCAGCTGCATCTCCTCTGTGGTTTGGTTCACAGTGAAGCGGTTCTCAGGAAGGGGACGGGACATAGAGATTGGAATGCGAAGTACATCCTCCAAAGCAAGCTCCCAGAAAGCTTTGCTTGAAGAGTCGGATGAAGAATGAATGCATGATTATGGTTCTTTAAAATTTTACTTACATTTGATTAGTTTTGGTCCATGAGACTAAGGGTGTTTTTTAACCTGCCTTGTTTAGTTCGGTTGAGTCAAACCCTGGAGCTTTTACCCCCTTGGTGCAGTTTGTTTGGGCAGGTGTGAACACAGCAATCGCATTTGGGTGGTTGTAAGTATCCATTCCCTATACATGTTTCAGAATGGAAACTTCCAAGGAAATGTAACAAACATGTTAAACCACTACTGGAATGCAGCAATAATGAGCTTGTCTGCCTGCCAATGCAGAGACAATCAGCCAAAACAAAGGATGAAACGGGCTATATTGCCTTTATAAACTTGTTACCTTTATAATAAGTCTCTCAAAATCCAAAATTTGTAACCTACGGTTACAAATCAACTCCGGTACGCTTTGGTAcggttcgtttgtggtgagaatgtGATCCGACCCACTTACCAGGTACTCTTCAAGTTTGAGTAAAACGgttcctgtagtcaggtgtgctttgCAATCTGCGATGCGGCAGAGAATGCAAACGGTAGCAGCTTGCAATATCTCTCACCGAAATATACTGCAGTCAAGCTCATGTCTCTGTGGTCAAACCAGTCCCTGCTAAAGTTGGAAACAGACACCGGCAGAGTGAAGTCCCGGTGAGCAGAGCAGATGTAGTAACGCTGTTCGCTAAACAATGTCTGGAAAAttctttaaatgaaatgagctggttttaCCATGTAGATGTGAGAAATGTGCTCTTTTTTTGCTCCCGCCCCAGACACATAATGGGTTGGTTTGTTGTGATGCATTTTGGTTCGCTTTgatttttctctgtgtgaaaccaaaccaaaccaagggGAAAACGCTCCAaaaaactcatcaactgattcggaccagaGCTAATGAactatacagtgccttgcgaaagtattcggccccttgaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226940 lncRNA upstream 22228 21722331 ~ 21724923 (+) True G167444
TU226937 lncRNA upstream 31758 21713943 ~ 21715393 (+) False dnajc18
TU226854 lncRNA upstream 253882 21476203 ~ 21493269 (+) True G167384
TU226840 lncRNA upstream 288287 21458121 ~ 21458864 (+) True G167376
TU226839 lncRNA upstream 290710 21455487 ~ 21456441 (+) True G167375
TU227007 lncRNA downstream 72031 21823653 ~ 21827326 (+) False sms
TU227096 lncRNA downstream 169660 21921282 ~ 21923414 (+) True G167544
XR_005636369.1 lncRNA downstream 179621 21931243 ~ 21933804 (+) False LOC120543580
XR_005636368.1 lncRNA downstream 180037 21931659 ~ 21933804 (+) True LOC120543580
TU227100 lncRNA downstream 181240 21932862 ~ 21933808 (+) False LOC120543580
XM_039778065.1 mRNA upstream 1417 21743197 ~ 21745734 (+) False gng8
XM_039778067.1 mRNA upstream 1417 21744773 ~ 21745734 (+) True gng8
XM_039777988.1 mRNA upstream 27442 21714543 ~ 21719709 (+) False dnajc18
XM_039778504.1 mRNA upstream 36774 21680133 ~ 21710377 (+) False LOC120544614
XM_039777989.1 mRNA downstream 12579 21764201 ~ 21770754 (+) True LOC120544341
XM_039776797.1 mRNA downstream 19041 21770663 ~ 21821936 (+) False LOC120543655
XM_039776798.1 mRNA downstream 19041 21770663 ~ 21821936 (+) False LOC120543655
XM_039776800.1 mRNA downstream 19041 21770663 ~ 21821936 (+) False LOC120543655
XM_039776796.1 mRNA downstream 19041 21770663 ~ 21821936 (+) True LOC120543655
TU226938 other upstream 26286 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 48770 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 138404 21599083 ~ 21608747 (+) True LOC120544432
TU226694 other upstream 543085 21202665 ~ 21204066 (+) False mia
XR_005636400.1 other upstream 550114 21192054 ~ 21197037 (+) False si:dkey-71l1.1
TU226958 other downstream 13775 21765397 ~ 21770198 (+) False LOC120544341
TU227214 other downstream 389923 22141545 ~ 22144199 (+) False kif20a
XR_005636496.1 other downstream 642894 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 2089915 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 2175720 23927342 ~ 23928481 (+) True G168226

Expression Profile