RNA id: XR_005636368.1


Basic Information

Item Value
RNA id XR_005636368.1
length 1652
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC120543580
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21931243 ~ 21933808 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acttatgccgcctgtataaacatcaggccacttacgtaggctacgtgGAGCCTATGTTATATAATGTTATGTCAGATGTGTTAGCACCATAGACTGTGACACAATTCAAATTGTGTACATTTGACAGCCTGCattaatagcctattataaaaAATTGGATTATAGCCGACCCATTACtgctttaattcaattttatggaCTGTTTAAAAGGATTTATGCAGGCGtgtaactatcggtaagcagggtaagcGGTGCTTACGGGCCAGACCAATCAGGGgccgcatcactggaagatatTGACAGCCGGGCCCCCTATCGCATTTTTATTACTCgcgacaatcccagcagtcccatcccatgtgcagccactgaccaagcgggagtgagaacgggtcaaattaatttccttgtttctgttatgacaACGAGACGTgtgaacatctcacatttaccaacaaaacataggcctacagcgaaagaccgtgcaaaacatttcagaaagtCCTGCCCAGACAGCAAGCCAACATtgaataaatattgattttccATCTGAATCATCATTATGGTTGACATTGAaatttcaatgcaaaataaatgttgaatcacCATTACCATATCGATGAACCCTGATGTTATTAATGTTGATGGCAACAACATTGGAACAACATTGATctatagttatctttatgatTGATTAAGCATTGATATTTGGTTTACCGGGTGATATTGTCAATGTGTTGAAAAAACATTGATTTAGAGTTGACCGGGAAACAACCTGTTGTTGAAAAGCCATCAACATATAGTTGACCGGTGAAAACAAAAGCCGACTGCTTTGAATGCCCGTTGCGAAAAACACGGTAAGTCCAGTGTCCAGTTTCCAGACTCCCTTGATATATTGCTCAATTTAACAGATAAATCATAATACACTGTATAAATTATAGCGTAATCATAACATTTTACTTTGTACTGCTCTTTAAGAAATACTTGTTATGTCGGCTGGCATTTAACTTTTAGCTAGCTAAGCTCTTCTGCAAAAATTAAGTTAGCCTACATAATGTTAGACAAGGTGGGCTTTTGATATTGGGATAACGGGCCGTCGGACTAAGGGCTTTTCGGTCCAGTGGGAAGTTTTTTGGATGTATATTTGAAGAGAGAGATTGAGTCATCGCTGATATTATTAGACATTAGCTCATGTTATATTAGACGTTCATTAATGTTGGCTGCGGAGTTAGCCTACACAACCTTGTCGGTTACCGAATGTGACGCTAATCTAACAGTAGGCTACGTGTGTTGTGCAATTTTGCATCATCAAGCTACAATGGCAGAGGGAAATCACAATCGCCACAGCTGAAGACAGTGATGACTATCTCCTACACACAACTGTAAAGAATATTTTCAGAGAGTGCATCCTGGTGAAGTAGGCTACAACAGAGAGAAAAGTGTGATCCACGCCCATGTGTGTTCTCCCTGCTTATGGCACCCTTCAGAGAGAAACACGAGGGACTCATTTTGATATGCCCTGACTCAACGACTGAGTAGCCTACGGTAATTGCCTATGAATTCTCACAAGCTGGGCAGAAGTGGCTGCGCTACGCCCCAGACCGGGCGGGAGGAGCTGGACGACCGACACTGCAATAGTTAgctcgttaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227096 lncRNA upstream 8245 21921282 ~ 21923414 (+) True G167544
TU227007 lncRNA upstream 104333 21823653 ~ 21827326 (+) False sms
TU226940 lncRNA upstream 206736 21722331 ~ 21724923 (+) True G167444
TU226937 lncRNA upstream 216266 21713943 ~ 21715393 (+) False dnajc18
TU226854 lncRNA upstream 438390 21476203 ~ 21493269 (+) True G167384
TU227103 lncRNA downstream 3885 21937689 ~ 21937949 (+) True G167549
TU227112 lncRNA downstream 42078 21975882 ~ 21977416 (+) True G167557
TU227116 lncRNA downstream 47538 21981342 ~ 21982252 (+) True G167559
TU227126 lncRNA downstream 82271 22016075 ~ 22017905 (+) True G167564
TU227127 lncRNA downstream 82271 22016075 ~ 22017905 (+) False G167564
XM_039778252.1 mRNA upstream 27111 21887771 ~ 21904548 (+) True phldb2a
XM_039778255.1 mRNA upstream 27111 21887771 ~ 21904548 (+) False phldb2a
XM_039778253.1 mRNA upstream 27111 21888051 ~ 21904548 (+) False phldb2a
XM_039777406.1 mRNA upstream 83561 21823721 ~ 21848098 (+) False sms
XM_039778395.1 mRNA downstream 11591 21945395 ~ 21952073 (+) True lipia
XM_039778663.1 mRNA downstream 51807 21985611 ~ 21994474 (+) True pdha1a
XM_039778664.1 mRNA downstream 61632 21995436 ~ 21998516 (+) True prdx4
XM_039826536.1 mRNA downstream 66761 22000565 ~ 22001935 (+) True LOC120575707
XM_039777678.1 mRNA downstream 69004 22002808 ~ 22015678 (+) False LOC120544110
TU226958 other upstream 161461 21765397 ~ 21770198 (+) False LOC120544341
TU226938 other upstream 210794 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 233278 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 322912 21599083 ~ 21608747 (+) True LOC120544432
TU226694 other upstream 727593 21202665 ~ 21204066 (+) False mia
TU227214 other downstream 207741 22141545 ~ 22144199 (+) False kif20a
XR_005636496.1 other downstream 460712 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 1907733 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 1993538 23927342 ~ 23928481 (+) True G168226
TU228425 other downstream 2476549 24410353 ~ 24415769 (+) False gab3

Expression Profile