RNA id: XM_039778395.1


Basic Information

Item Value
RNA id XM_039778395.1
length 2385
RNA type mRNA
GC content 0.44
exon number 11
gene id lipia
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21945395 ~ 21952073 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCAAAGAAACAGAGACTAGGTTTTTTTCACAGATTCAAAATTAAGTAGAATGGAGACACAAGAACCGGTTTGAGTACACAGGAACCAGGTGTGACTTCACAGGAATGTTTCACCTGTGGACACAATGACCTAGGACAAGGGGTGTGGTTATCCTGGTGAAAGAATGCAAGGCGGGAGTAGTACTGCTTTGCTGTTCCTCCTCTCACTTCCTGAAGTGAACGCTGTCCAAATATGTGGAGATACAAACAGACCTGTAATGTTCTGGACCTATGATTCACCAGACCAGGAAATATTATCCTACGGCAAAGATCATTCACGTGCTGGTGTAAAGCATGTTCCTGTGGCAATATCTGACACTGCTCCTGCTGACAACTGTTCAAATATACAAAGCTCAGAGATGTGAAGAATTTACAGATCTAGATCTCAGTCATGCAATCATTGGAACCAGCCTCAAAATTAGGTTGTTGCTGTACACCAGGGATAATGCCACCTGTGGTACACTCCTGTCCCACACGGACCTGTCCGCCCATCCCCAGTTTATCTTGTCCAGACCAACCACCTTCATCATTCATGGCTATCGTCCTACGGGATCTCCACCTGCATGGTTGCAGCAGATCTCGGACCTGCTGCTGGCCAGGGAAGACGGTAATGTAATAGTGGTGGACTGGAACCACGGAGCTGCTAATGTGAATTATTTAAAGGCCGTGGAGAACACATACAACGCAGCCAAGAACCTCACTGCTTTCATTACAAGGCTGCAGGAACATGGTGCCTCTTTGAGCTCCATCCACATGATCGGAATCAGTCTTGGGGCTCATATGTCAGGCTTAATAGGTGCTAACCTGAATGGGTCTCTTGGAAGAATTACAGCTCTGGATCCAGCTGGGCCTAAATTCACTGGCACTCCTCCAGAGCGCAGACTGGACCCCACAGACGCCCAGTTTGTGGATGTCCTGCACACAGACATAGATGCTCTTGGCTTTAGGGAACCTCTGGGTCACATCGATTTCTATGCTAATGGTGGAACAGACCAACCCGGCTGCCCAAAGACCATCTTTTCTGGAGGAGCCTATTTTAAATGCGACCACCAGAGATCAGTGTTCCTCTTCCTTGACTCTGTGAAAAGGACGTGTGTCAGCAAGGCCTTCCCCTGCTCCTCCTACAAAGACTTTCTGGATGGTAACTGCTTGAACTGTGACCGCTTTGGTGCTGCTGGGTGTCCTGTCTTTGGTTATGATGTCATCAAGTGGAAAGAGGTCCTGTTGAGGCTGGGCCAGACAAAAACTTACTTCACCACAAATGCAGATTCTCCGTTCTGCATGACAAACTACAGGTTGGAGGTGATGATATGGAACAAGGATGTACGCTGGGGCTACATGACTGTTAAACTTCACGGTAACGGTAAAGAAGCAGTGGCAACCATTGACCATACAGCATCCAAGTTCAAGAAGTACACAAAGACCAATTTGTTTGCCCAGTTTGACAAAGACCTTCAGTCAGTGGAAAAGGTGTCTCTCAAATTCTCCACTGGGAATGTATTCAAGCCCAAATATAAGCTCCGTGTTCTCCGCATACGTCTAAGACATCTAGAACGCAAGGAAAGGCCTCTCTGTCGATATGACATCCTTCTCGAGGAGAACAAAGAGGTTACCTTCAGGCCAATTTCCTGTGAAGAATCCAATTTCTGAAACAAAATCGGACCCCgcttaaaaaaattcaaacatACTGGAAGAGATTCAACCGTCTCTTCATTTTGTCAACGATTGTACAGGAaagcaggggcgtagcacacaATTCTGGGTCCTGTAGAAAGGTATTCTCCATCATGGGCCCCCTctccgcatccacagctattcattctagcatctttttgggccctcctcacatgagggtcCTGGGTATTCAGTCCCCTTtccacccccagtccgacaACCATGCAGGAAAGCAATAAGGACTGCAAAGATAGCATATCACAAGTGCTAACCTGGATTTGAAGTGATCATTTGTGATCTAAAAATGAAATGTGATATAGTATATATGGTGTATATGGGTTTTTAagagaatgtttttttaaagaaaaatattgGCTGAAAAGGGAATTTATATGCAATTTACTTGTAGAGTGAATTAGAATTTTCGttcatgcatttgaaaataaaggtatttcatAATGACATAATGTTATCTCAGTAATGGACTTGGTGCCTGCAACAAAAAAATCGAGGCTGGTTTTAAAAGAATAGtgtactttttttccccttctcgTCTGCTCTGTCTTTTAGAAGCTATTTCCTCAGTCAAACTTTCCTCAATTTCTTTTAACATATGACAtcactttatatttatttgtgtatatgGATGCATctttaattattaataaaaag

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19404 LIPH_I; phosphatidic acid-selective phospholipase A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227103 lncRNA upstream 7446 21937689 ~ 21937949 (+) True G167549
TU227100 lncRNA upstream 11587 21932862 ~ 21933808 (+) False LOC120543580
TU227102 lncRNA upstream 11587 21933164 ~ 21933808 (+) False LOC120543580
XR_005636369.1 lncRNA upstream 11591 21931243 ~ 21933804 (+) False LOC120543580
XR_005636368.1 lncRNA upstream 11591 21931659 ~ 21933804 (+) True LOC120543580
TU227112 lncRNA downstream 23809 21975882 ~ 21977416 (+) True G167557
TU227116 lncRNA downstream 29269 21981342 ~ 21982252 (+) True G167559
TU227126 lncRNA downstream 64002 22016075 ~ 22017905 (+) True G167564
TU227127 lncRNA downstream 64002 22016075 ~ 22017905 (+) False G167564
TU227132 lncRNA downstream 78224 22030297 ~ 22031365 (+) False G167569
XM_039778252.1 mRNA upstream 40847 21887771 ~ 21904548 (+) True phldb2a
XM_039778255.1 mRNA upstream 40847 21887771 ~ 21904548 (+) False phldb2a
XM_039778253.1 mRNA upstream 40847 21888051 ~ 21904548 (+) False phldb2a
XM_039777405.1 mRNA upstream 97297 21823716 ~ 21848098 (+) True sms
XM_039777406.1 mRNA upstream 97297 21823721 ~ 21848098 (+) False sms
XM_039778663.1 mRNA downstream 33538 21985611 ~ 21994474 (+) True pdha1a
XM_039778664.1 mRNA downstream 43363 21995436 ~ 21998516 (+) True prdx4
XM_039826536.1 mRNA downstream 48492 22000565 ~ 22001935 (+) True LOC120575707
XM_039777678.1 mRNA downstream 50735 22002808 ~ 22015678 (+) False LOC120544110
XM_039777680.1 mRNA downstream 50738 22002811 ~ 22015678 (+) False LOC120544110
TU226958 other upstream 175197 21765397 ~ 21770198 (+) False LOC120544341
TU226938 other upstream 224530 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 247014 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 336648 21599083 ~ 21608747 (+) True LOC120544432
TU226694 other upstream 741329 21202665 ~ 21204066 (+) False mia
TU227214 other downstream 189472 22141545 ~ 22144199 (+) False kif20a
XR_005636496.1 other downstream 442443 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 1889464 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 1975269 23927342 ~ 23928481 (+) True G168226
TU228425 other downstream 2458280 24410353 ~ 24415769 (+) False gab3

Expression Profile