RNA id: XM_039778252.1


Basic Information

Item Value
RNA id XM_039778252.1
length 4897
RNA type mRNA
GC content 0.48
exon number 17
gene id phldb2a
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21887771 ~ 21904548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCATATGAAGACTACTCTGCTGttacatagagagagagagagagagagagagagagagagagagagagagagagggagggagcgaGAGGAGTTCAGCTTCAGCAGCAACAGACACGCTGAAAAAAACTTGCAACTATGTGAATGGGACAAAAAGCAAAGgGAACAAAACATGTAGGGCCCAACTGAATCCTGCATCCTCAGACTGAATCAGAGAAAGGAGGTCAGTGTGATGAACACCATGCTTCCTCAGAGGAGTGCTGTCGCCACACTGGGCTACAGCTCAGACTGTGTGAAGATTGAGCACAGCGGCAGTGGCTCAGTGGGTGGGACATTGCTGAGGGGCTCTCGCTCTAAAGCAGAGCTACAGGACCTGATGGAGACACTGCAGCGCAGGAAGAGTGCTCTGGAGGCCAGTTTGAGGGCAGCTGAGTGCAGCCGCACGTACCTCAGCGTGCCCTCACCTGTTGGATCCCAGTCCACAAGGCCACCGTCAATCCTCAGCAATACCGAACGGCCCCCGTCTGCCTCCAGAACTTTTTCCTACatgaccagcagcagcagcgtgccTCCATCACCTCGACAAGGTGAACGCCAGCTGAACCCTAACGGCTTACATCGTCATTCCCACTCTCGCCACCAGTCACAAGACAGTCTGCTCCTCTCTTACGCAGCAGATGGAAGCTCTCTGCTCTCCTCCTATGGGCAGCCCCTACCTCGTTCTCCCAGGGTCAAAAGTGGAGCAGCCAGCGTGCCGTCCAGTCCTCGCATGGGCCGCAGGCTCTACTCTCAGGGCAAAGCTGGACAAGACTCCCGGCAGAGGAAatactccactggctccctccATAGCCTGGGGACGCATAGCCGTTCTCTGCCACGGCTTCACAACGCAGCAGAGCCCCCTGCACTGTCGCTACCATCACGACACTCAGTGGGTTCCCACAGAGGAGTGGGCTCAGCAGGGCAACGGCGCAGTCTCTCCTCCCTCGAGCAGCCACCAGATGTGACAGTACCAGCCAGCATGCCCAGCACTCCCAGGAGGGCCAGCCTGGCCTCTCTGAGCTCTCTGGGTGTAGAGATAGACGGGACAGGCTTAGATCTGGGCTTCGGAGAGAGGAGGTTATCCTTTGGGAAGGGTGGGCTGGGTCCAGGACAAAGGGTGGGCAGCATCAGCTCCTTGAATGGCAAAGAGGAGCTTAGAGATTATCACCAGCACCAGAGAGATGAACGACTCAGGGAGCAGAAAGTGCAGAGATTGGAGTGCCAGCGTCTCGAGACCATCTTAAACCTGTGTACTGAGTTTGGCCATGTGGAGAGAGAGCCGGCAGGCTCAGCTGTTTCTGACCTGCAGAAGATCAATAAGGAATTGGAGAAGCTGCAGGTGTCAGAGGATGAGTCAGTGTTCTCTGACTCTCCCAGCAGCGCTGCTCCAGAGAGCTGCTTTGGAGCCAAAGCTAGAGACTTTCAACTCGCTGAGGATCAGCAGGTCAGCCAGCGTCAGCAGAGCAGCTACAGAGAGGCCAGGTCCCACTCACCTGCTATCAGCCTGAACAGCAGTGCCCCCTCACCCTCCACCCACCACAGAGCCAAAGCCTTTGAGAGAGTGCAGCTGAAACAGGAAGTAACGCATATAGAGGAAGAGAGGATTCAAGTTCTGAACAACATAGAGGAGCTGGAGCAGAAGATCAAAGACCTGGACAACCAGATGGAGGAGTCTGTCCGAGAGATGGAGGTGGAGTGTGCTTTGCTGGAGGGGGAACAGGAGTCGGAGATGGCCCAGCTGCAGAGGGAAAAGGAGCTTCTGGACAAATTTAAGAAAAATATGCATATTGAGAAGACGAGCCACACTGAGAAGTCAcagGAGGCTGAGGAGCAGACAAAAAGTTTGGAGGATTTGGAGTTTCAGAAGCTGGAGAAAGAAATGAATCAGGATGAGTGTAAAGAAAATGAGAGCCAAGAGCTGCTGCGAGAGATTGCAGAGTGTCAGCGTCTTACAGTCACACGCAAGGAAAGACTCACGACGCTGAAGAAACAGTCCTCACAGATTACGTTACAGGCTCAGCAAGAAAGAGAGAATttccagagagagaaaaacaatttGCTCATCATGCTTCAGAAGgagagagagaaactggCATCTTTGGAAGGAAAGTATGCAGATTTATCTGAGGGGCAGACCTTCACCAACAACCCTACAGCCATCAAAGAGTACTCTCTGAAGGAAAGGAGAAGAAGCAGCAAAGAAAACTCTTCCCACCCAATTGACAACCTACCTCATAAGAGGAGCCAGCAGCTCCTCACCTCTTACGGCAGATCCCTGGGACGCACGCTTCCTTCAAAGCCCCACTTGCCTCTGTCCCAAAGCTCGAGCTGTGGCAGCGTCATCTCACAAGGCTTCAGCTTCTCCCCCAAGGACCTGAGCACCCGCCGCCTGCCCAAAACAGGCAACAGCCGTGCAAACATGaatgaagacagacagagaagaagtGATTTTTGCAGCAGGATGATCTCTGAGCCCAGCGTGTTCTTGGACTCCTTCTCCTACCCGGACAACAGCCAGGCCTCAGACACTGTCAGTGTGGACAGCTCTGACAGCCTGGAGACCAGCTTCTCCGCCTGCTCCCCAGACAATATCTCCAGTGCCAGTACGTCCAATATGGCAAAGATCGAGGAGATGGAGCGTTTACTTCGAGAGGCCCAGGCTGAGAAGCATAAGCTCCTCGAGAATCGGGAGCGTGAGATGGAGATGCGCAGGCATGCTCTGGAAGAGGAGCGGAGAAGAAGGGAGGAACTGGAGAAACGACTGCAGGAGGAGACAAGCCGAAGACAGAAACTTGTAGAAAGAGAGGTGAAGCTCAGGGAGAAACAAAGATCACAGtCCCGGCTGTTGACTCGCTACCTCCCTGTAAGGAAAGATGACTTTGATCTTCACGGCCATATTGAGGCAGCTGGACACAACCCAGACGCCTGCTTCCATCTGGCCATCACTGATAAAACCTGTCGAGGCTTTCTGGTCAAAATGGGCGGCAAGATCAAGACGTGGAAGAAACGCTGGTTTGTCTTCGACCAGAATCGCAGGACGCTCACCTACTATGCAGACAAACATGAGACCAAGATGAAAGGAGTCATTTACTTCCAAGCCATAGAGGAAGTGTACTATGACCATTTAAAGAGTGCACACAAAAGCCCCAACCCCTCGCTGACGTTCAGTGTGAAGACCCACGATCGGGTGTACTACATGGTGGCTCCGTCCCCTGAGGCCATGCGTATCTGGATGGATGTTATGGTTACGGGTGCAGAAGGACACATGCATTTCATGGTGTAACTGATCCCAACAGGTCAGGGTCCACACCGCTAAATTCCATTAGTAAACGTTGTGTCACATGAGAAGTTTTGCGCCACTTCTCTTGTATCACCATTAACAGCAAACGCATTGTGTAGAGCTGAGATTGATGTTCATCAGGTCAACGAACAaaaaaatgtacttctgtttacacactctataatttaatCATGTATAACAGATCAAAATAATTGATTTACAGGTTTTATAATTAAGCTGTTTAGTTATTTCTTTAGTTGTTTATGTACCGTGGTCACTAAATCTTGCACCAGTTTAGTAATGGCATTGTCTAACTTTATCCTTCCATAAACAACATCTTTGCCGTCTCATACTTCAGTCAACAATTGATCAGGGAAGCTTCTCAATGATTAGAGAGATCTGCTAAACTTCTAAACTGCGGTACGTACTGATGCTGCTTGTCTATAATAGATGCATATCTGCCAAACAGCTTTCTATAACCTAGCCTTTGGTAATGTATGTATCCGCCATGTACAAACCAGAGTTTAAGTTCTAGGTCCACCTCTGTTTCGTAGCCCTCTTCTTCTACCCTCCTCTCTACTTCTGGTTGGATGTCAGGCTGTATCAGTGGGTCACAACTTCTTGGCGATCTTTTCCCAGATAAGATCATCccttctgtatttgtgtttgcaaGAATGCAAatctttatttcattattatctCAGATTTATTATTTCTATATTATCACTAATATTCAAATGTAATTAGTGTGagtattattttacattttttaactcAAGCATTTTATTGCTGCTGCCAGATGACAATCATAAGCTCATCTTGTCTGCTTATTTAAAGCAGGGCTGAATGTCCACCATCAGTTTTCCTTCAAACCACATACATGTCTCTTTGCATCACTTTCATTCCAACGAGTCTTAATTTGGGCTTTTTCTTCACATATGCAAACTTCAGTCATGGAGGAGAGATGATTACAGGCACttttcaggttttattgttATGAATTATTAGTAATTGTTGGCAGATATTCTAATCATAAAAGTAGAAAATCTGACCAAATCACAATGGTACTGGGTGTCATGCCTAACACTGTGCAGCTAGCTCCCTCTATCTATAGTAGAGGCAGCAGGCCTGATATGATGAGGCCATGTTGTGCAGCAGGaatgctgtactgtatgtactacgTCACCCGcattttgttctgtttgttcACCAGCAGAGGTCCTCAGTGCAGAGTTATTGCACTGAAATGCCGTAATGCCCCTGCTTCAGGTCCATACTCCTCAATGATCCATGTTTTCTAATGCTTATATATCAAATATGTGCATGTATAAGCACATGCATATCAAGCTTCAGAATTGTTTTTTGGAAGCTAAACAGAAATCATGTTCAGGATCTTAAGCACAAATCAAATTTAGTTTTGAATGTTTTATAAAATACATATGTttgatctgttttttttttgtttttttactatttgCAACAGTCTGACGGTATTTGATAATTAAAGACCACTATAACACCAAGCTGTTGGTTTATAGACTGCAGAGAGCAGGTGAAGCTGCAGATAAGTTGTTGCC

Function

GO: NA

KEGG:

id description
K23794 PHLDB; pleckstrin homology-like domain family B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227007 lncRNA upstream 60445 21823653 ~ 21827326 (+) False sms
TU226940 lncRNA upstream 162848 21722331 ~ 21724923 (+) True G167444
TU226937 lncRNA upstream 172378 21713943 ~ 21715393 (+) False dnajc18
TU226854 lncRNA upstream 394502 21476203 ~ 21493269 (+) True G167384
TU226840 lncRNA upstream 428907 21458121 ~ 21458864 (+) True G167376
TU227096 lncRNA downstream 16734 21921282 ~ 21923414 (+) True G167544
XR_005636369.1 lncRNA downstream 26695 21931243 ~ 21933804 (+) False LOC120543580
XR_005636368.1 lncRNA downstream 27111 21931659 ~ 21933804 (+) True LOC120543580
TU227100 lncRNA downstream 28314 21932862 ~ 21933808 (+) False LOC120543580
TU227102 lncRNA downstream 28616 21933164 ~ 21933808 (+) False LOC120543580
XM_039777405.1 mRNA upstream 39673 21823716 ~ 21848098 (+) True sms
XM_039777406.1 mRNA upstream 39673 21823721 ~ 21848098 (+) False sms
XM_039777407.1 mRNA upstream 39673 21832938 ~ 21848098 (+) False sms
XM_039776797.1 mRNA upstream 65835 21770663 ~ 21821936 (+) False LOC120543655
XM_039778395.1 mRNA downstream 40847 21945395 ~ 21952073 (+) True lipia
XM_039778663.1 mRNA downstream 81063 21985611 ~ 21994474 (+) True pdha1a
XM_039778664.1 mRNA downstream 90888 21995436 ~ 21998516 (+) True prdx4
XM_039826536.1 mRNA downstream 96017 22000565 ~ 22001935 (+) True LOC120575707
XM_039777678.1 mRNA downstream 98260 22002808 ~ 22015678 (+) False LOC120544110
TU226958 other upstream 117573 21765397 ~ 21770198 (+) False LOC120544341
TU226938 other upstream 166906 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 189390 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 279024 21599083 ~ 21608747 (+) True LOC120544432
TU226694 other upstream 683705 21202665 ~ 21204066 (+) False mia
TU227214 other downstream 236997 22141545 ~ 22144199 (+) False kif20a
XR_005636496.1 other downstream 489968 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 1936989 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 2022794 23927342 ~ 23928481 (+) True G168226
TU228425 other downstream 2505805 24410353 ~ 24415769 (+) False gab3

Expression Profile