RNA id: XM_039777407.1


Basic Information

Item Value
RNA id XM_039777407.1
length 2540
RNA type mRNA
GC content 0.42
exon number 11
gene id sms
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 21823653 ~ 21848098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCGGAGTACCGCACCGCAGCGCAGAAGCCACGCCTGGTTTGGTAGCAGCAGTGGTAGCACGGCCCTACCTCTGTCTCTGCAGATAAATACTCGCAGCCGGCCTATTCCCAGGCATGGATGAAGGTTGCACTCAGACATGGCACTGCGACATTATACTCTCGACTTCAAGCTCTCTACGGCAGtTGACTCTGCTACGACAGTTCCTGATCTACTGTCCATATTTCATGAGCAAGAAATGACAGAGACTGCGCATGAAACAAATGGGCATGGATACCTTGGTACTTTTGTAGGCAAAAATGGCCGGCTTGCTATTCTGCGTGTGCACTCCCATGCGTTGGTCACCATTGATCTGCAGTGTTATGAAGAGGATAACATTGCACAACTAGACAATCTTTTAAATGCACTGGAAACGAAGCTAAAGGTCATCTTAAATGGCAATATTACAAGGATTAAAAGGCTCCCAGCCCTCGTACGAGGAGCAGAAGTTGACCGATACTGGCCCACAGCTGACGGCAGACTGGTTGAGTATGACATGGACCAGATAGTGTACGAAGAAGATTCTGCATACCAAAACATAAAGATATTGCACTCACAGCAGTATGGAAATGTCCTCATACTCGATAATGACTTAAACCTAGCAGAAAGTGATTTGGCCTACACCCAAGCCATCATGGGTAGCGGAAGAGAGAATTATGCTGGAAAAGAGGTGCTGATATTAGGAGGAGGTGATGGAGGCATCCTTTCTGAGATGGTCAAACAAAAGCCAAAGATGATCACCATGTTGGATATTGACCAGAAGGTGATAGATGCTTGCAAAAAGTACATGAGAGGAACTTGCGGGAATATCCTCGACAACCTGAAGGGAGACTGCTACCAAATACTAGTAGAGGACTGTGTCCCTGTGCTGAAGAAGTATGTCCAGGAAGGAAAGACGTTTGATTACGTCATCAATGACCTGACTGCAATCCCAATATCCACGCAGCCAGAAGAagactCTACATGGGAGTTCCTGCGTCTAATCTTAGATCTGTcaataaaagtcctgcatccCTCGGGGAAATATTTTACACAGGGTAACGCCGAGACCCTGACAGAGGCACTGAGTCTGTATGAGGAACAGCTGGGGAAGCTCTCGTGTCCGGTGGCATTCTCCAAAGAGGTGACATGTGTGCCCTCCTACTTGGAGCAATGGGTTTTCTACTCTGTATGGAAGAAGTAAAGACCCCCTGTCTTCTCTGCTTGAATCCTCAGCAGCTGGAATGTGAATGCTCCTCCCATTTCTGCTGTAGCCTTAAAGGTGTGTTCAGACTGAACGTGACATAAAAATTAGATGCAACACAAAGTTTGGATAAATGCATTTTTATGTGGGCTTTAAAATTTAAAGAGTTTAGCTGGAGAAATATAAAAAGAGATTCAAGaggtttattgtcatatgcacagtaAAGACAACTTACACCATGCGATGAAACGCTTGCTTTGCCAGTCTTCcttacaaaacaaataatgaaaatataataaagcttaaacaaaaaaaaaactataaatagTTTGAAAAAGGGGCAGGATTTAAAAAACgtacaagaataaaatgtataGAGTGCACTGTTCCACACACTCGTGACAGTCCATGCCTGTTGTTGGTGAGCCACGGCTGACTCACTACAACTAACAACTGTACAGCAATTGGCTGTTTTTAGTTAATAGGCATGGATTGCAAAACGCTCCAACAGTCAAGTTACTGTGAATGAATTAAGATGAAATTGACTTTACATTCAGTCTGACCACATCTTAGGGGTACAATGGCGGTTTTATCCCCTCTCAAATAACCCCATTCTACCCTAATCTTCCTCTtccttgttttagtttttaccATTGTTTGCTACAACGTTTGTTGTATTTAGTTTGTTACTTAATTTGGATTGTCCATTTGCATGTACTCTGAAGGAACTGTTCGATGTTTAAACCGTGATTAGATACACTGATAATGTGGTGTAACTCATCTTACATCCTCAACAGGTGTGTTCTCTTGTTTTCTTTAGGTTTTCTAAGTTCTTCACTTTTGAGTAATGAGCTCATGTCGTGTGATAGGCCAATATATAGCCTCAGCATAGTTGAACGGAGTTGCTTTTAAGCTGTTTTTGTTACTGCCTCTTCAATGTGATTTGATTATTTCAGATTGTATCAACGCAATGTGACCATGCCCAGTGAGACTGAAGTGTTTAAgtccaaatgtgttttaaaagggAAATGATTCCACCACTTTGCCACCTTTGTGCTTGTGCTGTTTTTATGTCCTGTTTTATTAGCACCTTTTGGTTTCTCCTGatatattttaagttttttttaagactGTATTAGGTGCATGTAAAGGACAGTGAATGTAGcttgcatatacagtacacagcACGTTTATTCGTGATCAACCCTGTGGGACTCgggttacatttatttattcaatatAATTTAACCAAATGCTGTTTGGTCACACTTGAGATACTTTCTTTGATCTCTTCAATAAAGTGTTTTGGGGGGGAATgtt

Function

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0016768 spermine synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU227007 lncRNA upstream 5612 21823653 ~ 21827326 (+) False sms
TU226940 lncRNA upstream 108015 21722331 ~ 21724923 (+) True G167444
TU226937 lncRNA upstream 117545 21713943 ~ 21715393 (+) False dnajc18
TU226854 lncRNA upstream 339669 21476203 ~ 21493269 (+) True G167384
TU226840 lncRNA upstream 374074 21458121 ~ 21458864 (+) True G167376
TU227096 lncRNA downstream 73184 21921282 ~ 21923414 (+) True G167544
XR_005636369.1 lncRNA downstream 83145 21931243 ~ 21933804 (+) False LOC120543580
XR_005636368.1 lncRNA downstream 83561 21931659 ~ 21933804 (+) True LOC120543580
TU227100 lncRNA downstream 84764 21932862 ~ 21933808 (+) False LOC120543580
TU227102 lncRNA downstream 85066 21933164 ~ 21933808 (+) False LOC120543580
XM_039776797.1 mRNA upstream 11002 21770663 ~ 21821936 (+) False LOC120543655
XM_039778252.1 mRNA downstream 39673 21887771 ~ 21904548 (+) True phldb2a
XM_039778255.1 mRNA downstream 39673 21887771 ~ 21904548 (+) False phldb2a
XM_039778253.1 mRNA downstream 39953 21888051 ~ 21904548 (+) False phldb2a
XM_039778395.1 mRNA downstream 97297 21945395 ~ 21952073 (+) True lipia
XM_039778663.1 mRNA downstream 137513 21985611 ~ 21994474 (+) True pdha1a
TU226958 other upstream 62740 21765397 ~ 21770198 (+) False LOC120544341
TU226938 other upstream 112073 21715699 ~ 21720865 (+) True dnajc18
TU226936 other upstream 134557 21680193 ~ 21698381 (+) False LOC120544614
TU226872 other upstream 224191 21599083 ~ 21608747 (+) True LOC120544432
TU226694 other upstream 628872 21202665 ~ 21204066 (+) False mia
TU227214 other downstream 293447 22141545 ~ 22144199 (+) False kif20a
XR_005636496.1 other downstream 546418 22394516 ~ 22422054 (+) False LOC120544391
XR_005636392.1 other downstream 1993439 23841537 ~ 23916038 (+) False gria3a
TU228068 other downstream 2079244 23927342 ~ 23928481 (+) True G168226
TU228425 other downstream 2562255 24410353 ~ 24415769 (+) False gab3

Expression Profile