RNA id: TU244459


Basic Information

Item Value
RNA id TU244459
length 555
lncRNA type inter_gene
GC content 0.60
exon number 4
gene id G180409
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 36120659 ~ 36123008 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCATCCTGTGTGTTAGCATGCCAGCTAACTCTTGTATGTCCCCTGCTGTGCTGCAGGAAGCTGGCGGGCTGCACGCTGTTCATCACCGGAGCGAGCCGAGGGATCGGTAAAGCCATCGCTCTGAAGGCCGCCAGAGACGGAGCTAACATCGTCATCGCCGCCAAGACCGCCGAGCCCCACCCCAAGCTACCGGGGACCATCTACACCGCCGCACAGGAGGtggAGGCAGCGGGGGGGAAAGCGCTGCCGTGCATCGTGGACATCAGAGATGAGACGCAGATCGGAGAAGCTGTCCAGAAAGCTGTCGACACGTTTGGAGGAATCGACATCCTGGTGAACAACGCCAGCGCCATCAACCTCACGGGGACTCTGGAGACGCCGATGAAGAAGGTCGACCTGATGCTGGGGATCAACCTGAGGGGCACGTACCTCACGTCTAAGCTGGTCATCCCCACCTGCTGAAGAGTTCCAGACCTCACATCCTGAACCTGTCGCCCCCCCTCAACCTCAACCCCGTCTGGTTCAAGAACCACACCGGTAACCACGGCAACACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU244452 lncRNA upstream 222 36088438 ~ 36120437 (+) False G180406
TU244451 lncRNA upstream 222 36119954 ~ 36120437 (+) True G180406
TU244453 lncRNA upstream 222 36119954 ~ 36120437 (+) False G180406
TU244454 lncRNA upstream 222 36119954 ~ 36120437 (+) False G180406
TU244455 lncRNA upstream 222 36119954 ~ 36120437 (+) False G180406
TU244464 lncRNA downstream 2433 36125441 ~ 36126156 (+) True G180411
TU244465 lncRNA downstream 3991 36126999 ~ 36128999 (+) True G180412
TU244488 lncRNA downstream 108803 36231811 ~ 36311558 (+) True G180422
TU244493 lncRNA downstream 108803 36231811 ~ 36311558 (+) False G180422
TU244496 lncRNA downstream 108803 36231811 ~ 36311558 (+) False G180422
XM_039779546.1 mRNA upstream 60136 36048606 ~ 36060523 (+) True LOC120545305
XM_039779562.1 mRNA upstream 460832 35645554 ~ 35659827 (+) True LOC120545314
XM_039779483.1 mRNA upstream 542055 35569647 ~ 35578604 (+) True LOC120545281
XM_039779565.1 mRNA upstream 627432 35488817 ~ 35493227 (+) True LOC120545316
XM_039779541.1 mRNA upstream 726532 35373617 ~ 35394127 (+) False LOC120545301
XM_039779493.1 mRNA downstream 100786 36223794 ~ 36265675 (+) False LOC120545287
XM_039779577.1 mRNA downstream 105292 36228300 ~ 36236912 (+) True LOC120545323
XM_039779492.1 mRNA downstream 132942 36255950 ~ 36265675 (+) True LOC120545287
XM_039779494.1 mRNA downstream 134049 36257057 ~ 36265675 (+) False LOC120545287
XM_039779090.1 mRNA downstream 197327 36320335 ~ 36323218 (+) False LOC120545105
TU244438 other upstream 61923 36058306 ~ 36058736 (+) False LOC120545305
TU244390 other upstream 102587 35850922 ~ 36018072 (+) False G180366
TU244424 other upstream 147598 35969766 ~ 35973061 (+) True G180382
TU244245 other upstream 1164693 34953064 ~ 34955966 (+) True G180268
TU244144 other upstream 1305749 34807258 ~ 34814910 (+) True G180216
TU244460 other downstream 72 36123080 ~ 36125385 (+) False G180410
TU244462 other downstream 72 36123080 ~ 36176371 (+) True G180410
TU244470 other downstream 53955 36176963 ~ 36177922 (+) True G180414
TU244471 other downstream 54332 36177340 ~ 36177922 (+) False G180414
TU244513 other downstream 197359 36320367 ~ 36323293 (+) True LOC120545105

Expression Profile