RNA id: TCONS_00070598


Basic Information

Item Value
RNA id TCONS_00070598
length 574
RNA type processed_transcript
GC content 0.54
exon number 6
gene id XLOC_036071
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 53204017 ~ 53260670 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACATGAGACTCTGCATGTGGAGCTGCGCGGTTTAGCCGTCAGACCTGCATTACTGCTGATCTCTGAGAGCGGACACAACACCCTCCACTTCAGGACTCTGGCAGTCGGTCAGAAGGTGGTGAAAAAGGTGATCATCCAGAACATTTCCTCACAGACAGTAACCCTGTCTTCATCACTGCTGGACGTGAACGGGCCATTTTCTGTGCTGAACGCCATGAGGTCCATCGCTCctgaagacaaacacacactcctgATTGCTTTTACACCTTTATTGGCCAAGAAGTACTGTGAGACTCTGGAGGTGAGCTGCAGTCAGATGACACTGGAGCTGACACTGCTCGGCGAGGCTGTCGATCCCATCATCACCTGCTCTCATGAAGGGCTCCTCGACTTCGACTGGGTTCCTGAAAACGAGAGCACATCACAAGTGTTCAGGCTGCAGAACGTCTCCTCTGTGGATGTGCAGTTCAGTGTGCTGCTAGAAAGCCTGTGTCCGAGCGAACAGAAACTGAGCTCCACTGCTGCCGTGGCAGGGGGCGTCATCAGTCCTGCTGGAGCCGCTGACATTACCGT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0044085 cellular component biogenesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0022607 cellular component assembly biological_process
GO:0070509 calcium ion import biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0070588 calcium ion transmembrane transport biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0002376 immune system process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0055085 transmembrane transport biological_process
GO:0042255 ribosome assembly biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0042592 homeostatic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0070925 organelle assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0006816 calcium ion transport biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function
GO:0005245 voltage-gated calcium channel activity molecular_function
GO:0005262 calcium channel activity molecular_function
GO:0008331 high voltage-gated calcium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040525-3 Predicted to enable high voltage-gated calcium channel activity. Predicted to be involved in calcium ion import. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated calcium channel complex. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human CACNA1D (calcium voltage-gated channel subunit alpha1 D).

Ensembl:

ensembl_id ENSDART00000142436

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00070597 lncRNA upstream 24403 53214254 ~ 53221239 (+) False XLOC_036071
TCONS_00070595 lncRNA upstream 38939 53204017 ~ 53206703 (+) False XLOC_036071
TCONS_00072313 lncRNA upstream 93757 53143211 ~ 53151885 (+) False XLOC_036070
TCONS_00070593 lncRNA upstream 121216 53120279 ~ 53124426 (+) True XLOC_036069
TCONS_00071974 lncRNA upstream 150109 53095004 ~ 53095533 (+) True XLOC_036068
TCONS_00072314 lncRNA downstream 640324 53896086 ~ 53896991 (+) True XLOC_036080
TCONS_00072315 lncRNA downstream 767200 54022962 ~ 54025857 (+) True XLOC_036082
TCONS_00070613 lncRNA downstream 771920 54027682 ~ 54034515 (+) True XLOC_036083
TCONS_00071975 lncRNA downstream 800762 54056524 ~ 54059853 (+) False XLOC_036084
TCONS_00071976 lncRNA downstream 811645 54067407 ~ 54070261 (+) True XLOC_036084
TCONS_00070594 mRNA upstream 93549 53143211 ~ 53152093 (+) True XLOC_036070
TCONS_00070592 mRNA upstream 103574 53120278 ~ 53142068 (+) False XLOC_036069
TCONS_00070591 mRNA upstream 148888 53080515 ~ 53096754 (+) False XLOC_036068
TCONS_00070590 mRNA upstream 176102 53064920 ~ 53069540 (+) True XLOC_036067
TCONS_00070589 mRNA upstream 183625 53051701 ~ 53062017 (+) True XLOC_036066
TCONS_00070599 mRNA downstream 13895 53269657 ~ 53330264 (+) False XLOC_036072
TCONS_00070600 mRNA downstream 56203 53311965 ~ 53334650 (+) True XLOC_036072
TCONS_00070601 mRNA downstream 88964 53344726 ~ 53373135 (+) False XLOC_036073
TCONS_00070602 mRNA downstream 88964 53344726 ~ 53378098 (+) True XLOC_036073
TCONS_00070603 mRNA downstream 132243 53388005 ~ 53401791 (+) True XLOC_036074
TCONS_00070588 other upstream 221878 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070587 other upstream 222025 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070576 other upstream 702250 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070562 other upstream 1082678 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070552 other upstream 2277643 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070607 other downstream 240439 53496201 ~ 53498302 (+) True XLOC_036078

Expression Profile

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