RNA id: TCONS_00071081


Basic Information

Item Value
RNA id TCONS_00071081
length 1696
RNA type mRNA
GC content 0.47
exon number 8
gene id XLOC_036366
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19268474 ~ 19280856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGAGATTCCCACATCCACTACACGCGGGTCAGCGGATCAATAACAGAATGGCAGACAATGTGAAAACAGCAGAGAAGGACAAAGAGGACTCACAGGAACAACAGAGTGTGATCTCCCGAGTGGGAAACCTGCCTCTGGTGAGTTCTGCGTGTGGCGCGGTGTATAATGCATACAGCAGCACTAAAGACAGCGTTCCCCTCCTAAAAGGAGTAATGGAGGTGGCAGAGAGCGGTGTCCGCACACTGGGTGCTGCTGCTTCAACAGGCTCCAAACCCATACTAGACCGACTGGAACCTCAGATTGCAGCTGTAAATGAATATGCTATAAAAGGGCTGGAGAAAGTGGAAGGAAACCTACCAATTTTACAACAGCCAGCAGACAAGCTGGTATCCGACACAGTGGGCATGGTGTACCAGTCGGTAACAGGAGCGAAGGATGCTGTGGTGGGGGCTGTGATGGAGGGTGTGGAGAAGACACGTATGGCTGTGACTGGGGGCATAAACACCGTCATGGGGTCCCGTGTGGGCCAGATGGTCAGTAATGGTGTAGATAAGGCTCTCACTCACTCTGAAGATTGGGTCGAGCAGAACCTTCCAATCAGTGAAAAGGAGCTTGCTACGCTTGCTGAGCCAAGGCCAGGGGAGGAGGAAGGATTCATAGTGTCCACTCGTTCCAGCTACTTTGTCCGTCTGGGTAAACTGTCTGCCAAAGTTCGAGAGAGGGCGCTTGAGCAGTCCCTCCTTAGGGCCCGCAAGGCCAGAGACACTACACATGCGTCTGTGACTCAAATGACCAGCACTATGGACCTGCTGGAAAGTGCCCGGGTTACCTTGACCAGTGCCAATCAGCAGCTAGCAGGGGCTCCAGAGCAGCTGCTTCAGCGATGGAAAGAGTGGAAAGAAGGACAGCCCAAAGAACTGCAGGAAAAAGTAACAGCAGAGACAGAAGCGGACGGAGCAAAAGACAAAGAACAGGAGATGGAGTCGAAAGCCCTGTTGATGGTGCGTGGTTTGAGTGATCAGCTGAAGACGGCGTGTTCAGGGGTCGTGTCCAGTGTTCAGGGTCTTCCAGGCACTGTGCAGGAACAGCTTCTCAATGCTCGACGTACAGCTGGAGAACTACAGGCATCGCTGAGCGGCACCAAGACCCTCACACCCGTCCTCTTACTGCAGACACGCCAGCAGATTGGCCAGGTACGGCAGTCTCTTGATGGAGTCGTGGAGTATCTACTCAATAACACTCCTCTGAATTGGCTGGTTGGGCCTTTTGCGCCTCAGATAACAGAGAAAGGTGAATGAAATTGCCACACAACCTAAATAAATCTGATGTTATGATATAATAGGTTAATATATGGTGCAAATTATTGTTTAACTACTTCTGTTTCAAATTTGTTGTTTACTGGAGTCACTACTAGACAGGTAAATTGGTTTTACCAAAATTGGTATGACAGTATAATGAAGTGAAAATTGCACATTTGTATCATTTCCTATTAAAATTGTCAGTATTTGAAAGCAAGTGTTATAACACAacagaatataaatatttaatgctGAATGTACTTTCTAAAAAAAAGCAAGCCATACtttatagttgttgttttgtaattcttaatattcatattttaaaagaaGTCTGTTGTTATCTGACATATAAAATAAATCGATggtttaaataaacactttttgtCCGAGAA

Function

GO:

id name namespace
GO:0010890 positive regulation of sequestering of triglyceride biological_process
GO:0019915 lipid storage biological_process
GO:0005811 lipid droplet cellular_component
GO:0005829 cytosol cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2056 Predicted to enable DNA binding activity and zinc ion binding activity. Predicted to be involved in lipid storage and positive regulation of sequestering of triglyceride. Predicted to be active in cytosol and lipid droplet.

Ensembl:

ensembl_id ENSDART00000100473

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071073 lncRNA downstream 54223 19214207 ~ 19216638 (-) False XLOC_036363
TCONS_00072023 lncRNA downstream 497852 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA downstream 497852 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00072437 lncRNA downstream 671505 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00071061 lncRNA downstream 738444 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072024 lncRNA upstream 192976 19473832 ~ 19477990 (-) True XLOC_036370
TCONS_00072025 lncRNA upstream 704986 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00072026 lncRNA upstream 704987 19985843 ~ 19988969 (-) False XLOC_036374
TCONS_00072027 lncRNA upstream 705890 19986746 ~ 19988352 (-) False XLOC_036374
TCONS_00072028 lncRNA upstream 705890 19986746 ~ 19988666 (-) False XLOC_036374
TCONS_00071078 mRNA downstream 4448 19253205 ~ 19266413 (-) False XLOC_036365
TCONS_00071079 mRNA downstream 4536 19255992 ~ 19266325 (-) True XLOC_036365
TCONS_00071077 mRNA downstream 24519 19232238 ~ 19246342 (-) True XLOC_036364
TCONS_00071072 mRNA downstream 54177 19213867 ~ 19216684 (-) False XLOC_036363
TCONS_00071075 mRNA downstream 54681 19214725 ~ 19216180 (-) False XLOC_036363
TCONS_00071082 mRNA upstream 2287 19283143 ~ 19313510 (-) False XLOC_036367
TCONS_00071083 mRNA upstream 2287 19283143 ~ 19342111 (-) False XLOC_036367
TCONS_00071085 mRNA upstream 19333 19300189 ~ 19313510 (-) True XLOC_036367
TCONS_00071086 mRNA upstream 83712 19364568 ~ 19395110 (-) True XLOC_036368
TCONS_00071087 mRNA upstream 117479 19398335 ~ 19451487 (-) False XLOC_036369
TCONS_00071076 other downstream 54204 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 55177 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 686054 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 732995 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071054 other downstream 751740 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071084 other upstream 15306 19296162 ~ 19313415 (-) False XLOC_036367
TCONS_00071104 other upstream 1133990 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 1551728 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 1561278 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 1659603 20940459 ~ 20943772 (-) True XLOC_036389

Expression Profile

//