RNA id: TCONS_00071085


Basic Information

Item Value
RNA id TCONS_00071085
length 753
RNA type mRNA
GC content 0.54
exon number 5
gene id XLOC_036367
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 19283143 ~ 19342111 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGGAGCCGCTGAGACTCCAGACATCCGTGACCGACTGCACTGCTTGAAGGAGAGCTCTGCGGACTATACTTGAAAACATTTCACCCATTTTCTCTGGACTTGGGCTGTGTTCTGATGCCGCTACCGGACGATGAGAGAGGCCCTCACCATGAAATTCGCTTGGAAAGCTAAAATGagCTCAGTGCAGGACTGGGGAGAGGAGGTTGAGGAAGGAGCCATATACAACGTGACGCTGAAGAGGGTCCAAATTCAGCAGGCCGCTAACAAAGGAGCAAGATGGCTGGGGGCGGAGGGTGACCGTTTGCCCCCGGGTCACACGGTCAGTCAGTTGGAGACGTGTAAAATCAGAAGCATTCGAGCAGGGACTCTTGAACGCCTGGTAGAAACGCTCCTTACAGCATTCGGTGACAATGACCTTACCTACACCAGCATCTTCCTCTCCACGTACAGGGCCTTTGCCTCAACGCAGAGCGTCCTGGAGTTGCTGCTGGACAGGTATGGCAGTTTTGAGGATTGTGAAGGAGAGCGTAGCCAATGTCAGACTGGAGAGAGCAGAAAAGCTGTTAGAAAAGCTTTGGCCTCTATTCTGAGAGCCTGGCTGGATCAGTGTCCAGAGGACTTCCAGGAACCTCCGTCATATCCGAGCTTGCATCGTGTGCTGGGTTTCCTGCAGAAGGCCATGCCAGGCTCAGAGCCAATGCGCCGCGCTCAGAGTCTGCTAGAACAATTGCGTGTCCAGGCCAGCCTAGAGA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04014 Ras signaling pathway

ZFIN:

id description
ZDB-GENE-040426-1816 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL1 (ral guanine nucleotide dissociation stimulator like 1).

Ensembl:

ensembl_id ENSDART00000137133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071073 lncRNA downstream 83551 19214207 ~ 19216638 (-) False XLOC_036363
TCONS_00072023 lncRNA downstream 527180 18771607 ~ 18773009 (-) False XLOC_036359
TCONS_00072022 lncRNA downstream 527180 18771607 ~ 18773009 (-) True XLOC_036359
TCONS_00072437 lncRNA downstream 700833 18594067 ~ 18599356 (-) True XLOC_036356
TCONS_00071061 lncRNA downstream 767772 18524042 ~ 18532417 (-) False XLOC_036353
TCONS_00072024 lncRNA upstream 160322 19473832 ~ 19477990 (-) True XLOC_036370
TCONS_00072025 lncRNA upstream 672332 19985842 ~ 19989009 (-) False XLOC_036374
TCONS_00072026 lncRNA upstream 672333 19985843 ~ 19988969 (-) False XLOC_036374
TCONS_00072027 lncRNA upstream 673236 19986746 ~ 19988352 (-) False XLOC_036374
TCONS_00072028 lncRNA upstream 673236 19986746 ~ 19988666 (-) False XLOC_036374
TCONS_00071081 mRNA downstream 19333 19270861 ~ 19280856 (-) True XLOC_036366
TCONS_00071080 mRNA downstream 20405 19268474 ~ 19279784 (-) False XLOC_036366
TCONS_00071078 mRNA downstream 33776 19253205 ~ 19266413 (-) False XLOC_036365
TCONS_00071079 mRNA downstream 33864 19255992 ~ 19266325 (-) True XLOC_036365
TCONS_00071077 mRNA downstream 53847 19232238 ~ 19246342 (-) True XLOC_036364
TCONS_00071086 mRNA upstream 51058 19364568 ~ 19395110 (-) True XLOC_036368
TCONS_00071087 mRNA upstream 84825 19398335 ~ 19451487 (-) False XLOC_036369
TCONS_00071088 mRNA upstream 87576 19401086 ~ 19467011 (-) True XLOC_036369
TCONS_00071089 mRNA upstream 156168 19469678 ~ 19487327 (-) False XLOC_036370
TCONS_00071090 mRNA upstream 328689 19642199 ~ 19649617 (-) True XLOC_036371
TCONS_00071076 other downstream 83532 19214829 ~ 19216657 (-) True XLOC_036363
TCONS_00071074 other downstream 84505 19214725 ~ 19215684 (-) False XLOC_036363
TCONS_00071065 other downstream 715382 18584693 ~ 18584807 (-) True XLOC_036355
TCONS_00071060 other downstream 762323 18523081 ~ 18537866 (-) False XLOC_036353
TCONS_00071054 other downstream 781068 18515040 ~ 18519121 (-) False XLOC_036353
TCONS_00071104 other upstream 1101336 20414846 ~ 20414961 (-) True XLOC_036381
TCONS_00071106 other upstream 1519074 20832584 ~ 20838022 (-) False XLOC_036383
TCONS_00071108 other upstream 1528624 20842134 ~ 20844502 (-) True XLOC_036384
TCONS_00071115 other upstream 1626949 20940459 ~ 20943772 (-) True XLOC_036389
TCONS_00071158 other upstream 2970784 22284294 ~ 22287211 (-) False XLOC_036407

Expression Profile

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