Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00071822 |
| length | 871 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 5 |
| gene id | XLOC_036786 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007119.7 |
| NCBI id | CM002892.2 |
| chromosome length | 54304671 |
| location | 51430597 ~ 51524453 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0018108 | peptidyl-tyrosine phosphorylation | biological_process |
| GO:0045471 | response to ethanol | biological_process |
| GO:0033674 | positive regulation of kinase activity | biological_process |
| GO:0043589 | skin morphogenesis | biological_process |
| GO:0036342 | post-anal tail morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0021628 | olfactory nerve formation | biological_process |
| GO:0043406 | positive regulation of MAP kinase activity | biological_process |
| GO:0008543 | fibroblast growth factor receptor signaling pathway | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0045597 | positive regulation of cell differentiation | biological_process |
| GO:0009953 | dorsal/ventral pattern formation | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008284 | positive regulation of cell population proliferation | biological_process |
| GO:0071699 | olfactory placode morphogenesis | biological_process |
| GO:0060249 | anatomical structure homeostasis | biological_process |
| GO:0001889 | liver development | biological_process |
| GO:0048916 | posterior lateral line development | biological_process |
| GO:0016310 | phosphorylation | biological_process |
| GO:0042664 | negative regulation of endodermal cell fate specification | biological_process |
| GO:0007169 | transmembrane receptor protein tyrosine kinase signaling pathway | biological_process |
| GO:0010863 | positive regulation of phospholipase C activity | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0031410 | cytoplasmic vesicle | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043235 | receptor complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0008201 | heparin binding | molecular_function |
| GO:0017134 | fibroblast growth factor binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0016301 | kinase activity | molecular_function |
| GO:0004713 | protein tyrosine kinase activity | molecular_function |
| GO:0005007 | fibroblast growth factor-activated receptor activity | molecular_function |
| GO:0004714 | transmembrane receptor protein tyrosine kinase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-255 | Enables fibroblast growth factor-activated receptor activity. Acts upstream of or within several processes, including animal organ development; fin regeneration; and negative regulation of endodermal cell fate specification. Predicted to be located in plasma membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including head; integument; intestine; nervous system; and trunk vasculature. Human ortholog(s) of this gene implicated in several diseases, including Jackson-Weiss syndrome; bone disease (multiple); cleft lip; hematologic cancer (multiple); and hypogonadotropic hypogonadism (multiple). Orthologous to human FGFR1 (fibroblast growth factor receptor 1). |
| ensembl_id | ENSDART00000149261 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00071813 | lncRNA | downstream | 122791 | 51345350 ~ 51349111 (-) | True | XLOC_036783 |
| TCONS_00071810 | lncRNA | downstream | 152403 | 51314085 ~ 51319499 (-) | True | XLOC_036782 |
| TCONS_00071809 | lncRNA | downstream | 157471 | 51309011 ~ 51314431 (-) | False | XLOC_036782 |
| TCONS_00072090 | lncRNA | downstream | 259234 | 51212413 ~ 51212668 (-) | True | XLOC_036781 |
| TCONS_00072089 | lncRNA | downstream | 517658 | 50953658 ~ 50954244 (-) | True | XLOC_036777 |
| TCONS_00072542 | lncRNA | upstream | 479733 | 51986810 ~ 51988347 (-) | True | XLOC_036793 |
| TCONS_00072545 | lncRNA | upstream | 790624 | 52297701 ~ 52310513 (-) | False | XLOC_036796 |
| TCONS_00072547 | lncRNA | upstream | 790624 | 52297701 ~ 52310513 (-) | False | XLOC_036796 |
| TCONS_00072546 | lncRNA | upstream | 790624 | 52297701 ~ 52310513 (-) | False | XLOC_036796 |
| TCONS_00072544 | lncRNA | upstream | 790624 | 52297701 ~ 52310513 (-) | False | XLOC_036796 |
| TCONS_00071816 | mRNA | downstream | 67096 | 51375308 ~ 51404806 (-) | True | XLOC_036785 |
| TCONS_00071815 | mRNA | downstream | 104604 | 51350977 ~ 51367298 (-) | True | XLOC_036784 |
| TCONS_00071814 | mRNA | downstream | 106336 | 51350453 ~ 51365566 (-) | False | XLOC_036784 |
| TCONS_00071811 | mRNA | downstream | 122471 | 51341612 ~ 51349431 (-) | False | XLOC_036783 |
| TCONS_00071812 | mRNA | downstream | 122473 | 51341617 ~ 51349429 (-) | False | XLOC_036783 |
| TCONS_00071823 | mRNA | upstream | 66047 | 51573124 ~ 51579286 (-) | False | XLOC_036787 |
| TCONS_00071824 | mRNA | upstream | 66245 | 51573322 ~ 51578926 (-) | True | XLOC_036787 |
| TCONS_00071825 | mRNA | upstream | 79406 | 51586483 ~ 51599036 (-) | False | XLOC_036788 |
| TCONS_00071826 | mRNA | upstream | 79567 | 51586644 ~ 51599169 (-) | False | XLOC_036788 |
| TCONS_00071827 | mRNA | upstream | 79572 | 51586649 ~ 51599152 (-) | True | XLOC_036788 |
| TCONS_00071804 | other | downstream | 443949 | 51027839 ~ 51027953 (-) | True | XLOC_036779 |
| TCONS_00071797 | other | downstream | 953999 | 50517782 ~ 50517903 (-) | True | XLOC_036773 |
| TCONS_00071775 | other | downstream | 1716003 | 49746232 ~ 49755899 (-) | False | XLOC_036760 |
| TCONS_00071744 | other | downstream | 2299402 | 49169768 ~ 49172500 (-) | False | XLOC_036747 |
| TCONS_00071743 | other | downstream | 2319427 | 49149904 ~ 49152475 (-) | True | XLOC_036746 |
| TCONS_00071865 | other | upstream | 1849702 | 53356779 ~ 53356896 (-) | True | XLOC_036812 |
