RNA id: TCONS_00072089


Basic Information

Item Value
RNA id TCONS_00072089
length 587
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id XLOC_036777
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50953658 ~ 50954244 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATATTCAACTTAGCGTGGTAAACGATATATGGGCCAATAAAGGAACGAATGTGTGACTATAAAACCCACTTTACCTCAGTGGTAATGTTAGGTTACTTTAATGTCGAAAACAGAATATTAGCATATAAAGCACCATACTCTAATCTAATTACCTTCAGGGGGGTTCATTGTTCTATTGTTTACAGCAGGCTCACTTTAACAATGATGAACAAATCTGCAGTAACGTTACACTGCTATGCTAACGAACTGTTAGCATAGCCACATTACTGCCTCATAACACCACACGAATCTCAGACTTACCTGAACATTACATTCTTTTCCTTGAAGCGGCTTCACTGTGAGAAtcatttttacatatataaaaaattaaatactaaataagCAATAAATAGTTATCTCGTTGAACATTCGTAAACTAGCAGCCGATGTTTCCCACGGACATGACGTCAATGTCTCGCTACTGCGCATGCGCTGTTGGAGCCTCATCCgtttataaactaaacaaaaccgAGAGTGCAGAAACTTTCGTGAAAATTACAGACGTGtgttatatatgtaaatatattaaattactgTGTATCTATGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00071800 lncRNA downstream 55301 50889589 ~ 50898357 (-) True XLOC_036776
TCONS_00072541 lncRNA downstream 441771 50508761 ~ 50511887 (-) True XLOC_036772
TCONS_00071793 lncRNA downstream 694304 50258022 ~ 50259354 (-) True XLOC_036768
TCONS_00072540 lncRNA downstream 813675 50137475 ~ 50139983 (-) True XLOC_036766
TCONS_00072539 lncRNA downstream 818114 50134007 ~ 50135544 (-) True XLOC_036765
TCONS_00072090 lncRNA upstream 258169 51212413 ~ 51212668 (-) True XLOC_036781
TCONS_00071809 lncRNA upstream 354767 51309011 ~ 51314431 (-) False XLOC_036782
TCONS_00071810 lncRNA upstream 359841 51314085 ~ 51319499 (-) True XLOC_036782
TCONS_00071813 lncRNA upstream 391106 51345350 ~ 51349111 (-) True XLOC_036783
TCONS_00071822 lncRNA upstream 517658 51471902 ~ 51507077 (-) True XLOC_036786
TCONS_00071799 mRNA downstream 64852 50840565 ~ 50888806 (-) True XLOC_036775
TCONS_00071798 mRNA downstream 428298 50520139 ~ 50525360 (-) True XLOC_036774
TCONS_00071796 mRNA downstream 470877 50463227 ~ 50482781 (-) True XLOC_036771
TCONS_00071795 mRNA downstream 607412 50322769 ~ 50346246 (-) True XLOC_036770
TCONS_00071794 mRNA downstream 665709 50284859 ~ 50287949 (-) True XLOC_036769
TCONS_00071801 mRNA upstream 14746 50968990 ~ 50981175 (-) False XLOC_036778
TCONS_00071802 mRNA upstream 15204 50969448 ~ 50979047 (-) False XLOC_036778
TCONS_00071803 mRNA upstream 15204 50969448 ~ 50979063 (-) True XLOC_036778
TCONS_00071805 mRNA upstream 211148 51165392 ~ 51293265 (-) False XLOC_036780
TCONS_00071806 mRNA upstream 211736 51165980 ~ 51293301 (-) True XLOC_036780
TCONS_00071797 other downstream 435755 50517782 ~ 50517903 (-) True XLOC_036773
TCONS_00071775 other downstream 1197759 49746232 ~ 49755899 (-) False XLOC_036760
TCONS_00071744 other downstream 1781158 49169768 ~ 49172500 (-) False XLOC_036747
TCONS_00071743 other downstream 1801183 49149904 ~ 49152475 (-) True XLOC_036746
TCONS_00071741 other downstream 2163071 48778961 ~ 48790587 (-) True XLOC_036742
TCONS_00071804 other upstream 73595 51027839 ~ 51027953 (-) True XLOC_036779
TCONS_00071818 other upstream 480252 51434496 ~ 51507179 (-) False XLOC_036786
TCONS_00071865 other upstream 2402535 53356779 ~ 53356896 (-) True XLOC_036812