Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00073071 |
| length | 440 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 2 |
| gene id | XLOC_037117 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007120.7 |
| NCBI id | CM002893.2 |
| chromosome length | 56459846 |
| location | 23003208 ~ 23007941 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0030111 | regulation of Wnt signaling pathway | biological_process |
| GO:0014812 | muscle cell migration | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0031016 | pancreas development | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0060029 | convergent extension involved in organogenesis | biological_process |
| GO:0032783 | super elongation complex | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0070016 | armadillo repeat domain binding | molecular_function |
| GO:0008013 | beta-catenin binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-040625-179 | Enables armadillo repeat domain binding activity and beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and muscle cell migration. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including blastoderm; blastodisc; nervous system; pleuroperitoneal region; and presumptive neural retina. Orthologous to human EAF2 (ELL associated factor 2). |
| ensembl_id | ENSDART00000134119 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00073069 | lncRNA | upstream | 2001 | 23003876 ~ 23004450 (+) | False | XLOC_037117 |
| TCONS_00075104 | lncRNA | upstream | 8391 | 22988941 ~ 22998060 (+) | True | XLOC_037116 |
| TCONS_00073062 | lncRNA | upstream | 308597 | 22695633 ~ 22697854 (+) | True | XLOC_037112 |
| TCONS_00074896 | lncRNA | upstream | 363766 | 22642386 ~ 22642685 (+) | True | XLOC_037110 |
| TCONS_00073038 | lncRNA | upstream | 645709 | 22359962 ~ 22360742 (+) | True | XLOC_037106 |
| TCONS_00074897 | lncRNA | downstream | 119178 | 23126156 ~ 23128231 (+) | False | XLOC_037122 |
| TCONS_00074898 | lncRNA | downstream | 119565 | 23126543 ~ 23127995 (+) | True | XLOC_037122 |
| TCONS_00074899 | lncRNA | downstream | 314856 | 23321834 ~ 23333979 (+) | True | XLOC_037126 |
| TCONS_00075106 | lncRNA | downstream | 356870 | 23363848 ~ 23419530 (+) | False | XLOC_037127 |
| TCONS_00075107 | lncRNA | downstream | 356876 | 23363854 ~ 23456345 (+) | False | XLOC_037127 |
| TCONS_00073067 | mRNA | upstream | 66941 | 22929675 ~ 22939510 (+) | True | XLOC_037115 |
| TCONS_00073065 | mRNA | upstream | 204279 | 22781019 ~ 22802172 (+) | False | XLOC_037114 |
| TCONS_00073066 | mRNA | upstream | 204279 | 22782027 ~ 22802172 (+) | True | XLOC_037114 |
| TCONS_00073064 | mRNA | upstream | 204547 | 22780901 ~ 22801904 (+) | False | XLOC_037114 |
| TCONS_00073063 | mRNA | upstream | 226638 | 22764235 ~ 22779813 (+) | True | XLOC_037113 |
| TCONS_00073072 | mRNA | downstream | 2630 | 23009608 ~ 23023288 (+) | True | XLOC_037118 |
| TCONS_00073074 | mRNA | downstream | 42522 | 23049500 ~ 23056240 (+) | True | XLOC_037120 |
| TCONS_00073075 | mRNA | downstream | 117274 | 23124252 ~ 23162384 (+) | True | XLOC_037121 |
| TCONS_00073076 | mRNA | downstream | 217783 | 23224761 ~ 23231203 (+) | True | XLOC_037123 |
| TCONS_00073077 | mRNA | downstream | 225923 | 23232901 ~ 23234064 (+) | True | XLOC_037124 |
| TCONS_00073057 | other | upstream | 343723 | 22658229 ~ 22662728 (+) | True | XLOC_037111 |
| TCONS_00073048 | other | upstream | 429392 | 22576945 ~ 22577059 (+) | True | XLOC_037108 |
| TCONS_00073045 | other | upstream | 558873 | 22391566 ~ 22447578 (+) | False | XLOC_037107 |
| TCONS_00073026 | other | upstream | 1012536 | 21993128 ~ 21993915 (+) | False | XLOC_037097 |
| TCONS_00073021 | other | upstream | 1015239 | 21990058 ~ 21991212 (+) | False | XLOC_037096 |
| TCONS_00073073 | other | downstream | 39289 | 23046267 ~ 23046385 (+) | True | XLOC_037119 |
| TCONS_00073080 | other | downstream | 357264 | 23364242 ~ 23367209 (+) | False | XLOC_037128 |
| TCONS_00073088 | other | downstream | 540667 | 23547645 ~ 23555977 (+) | True | XLOC_037129 |
| TCONS_00073090 | other | downstream | 689946 | 23696924 ~ 23700456 (+) | True | XLOC_037131 |
| TCONS_00073100 | other | downstream | 878665 | 23885643 ~ 23886737 (+) | True | XLOC_037136 |
