RNA id: XM_039796695.1


Basic Information

Item Value
RNA id XM_039796695.1
length 4277
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120556879
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11115242 ~ 11147442 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACTCCAGGGGGGCAGCAgggtatgtgtgtatgagtgtgtgtttaaGGCTAGTCGAGCAGCAGGGGAACTTGAAAACTTCACTGCTTTCAGCGAGGGAGATCTGTGATCGGAGGGGTCAGCGATTGGGAGCTGAATCGGTTGCTTACAGTCCAGCTGTGATCGACAGAGGAAGACCGGTCCAGTTCTCAACATTGGAACGATTTCCGGCCAACATGGATGATTTAGATGCTTTGTTGGCGGACCTTGAGTCCACAACATCCCACATTTCCAAGCGTCCGCTCTTCCTGTCTGACGAGAGCGCCTACTCCTTCCCTGTTGGTGGTCAGACCAAGCAAGACCTCTGCTCTCCGCCCCAAGTCCCACCCACTCCCTCTGAGCTAAACGGACTTGATGAAACAGAGTCCTTCAGCTCAGCTCAGAGAAGTCCCTGGTCTAGAGATAGCAGCAGTCCAACTCAACCCATTGGTGAAGAGGACCACGTATACAGTTTCCCTAATAAGCAGAAGAGTAGTGAGTCATCAGCCATGAACTCATCCTTGGGCAGCAACCTGTCTGAGCTGGACCGCCTGCTTTTGGAGCTTAACGCTGTCCAGCAAAGCACTCCTGCCTTCCCCACAGAAGAAGAAGCAGCTCCCCCGCTGCCTGCCAGCAGCGTCATCCACCATGTCCAGGAGAATGGAGTCTCTACTGTAGGCAAGGCTGCTCCACCTGTATTAGAGAAGCCCAAACGCAGTATGGCAGCTCGGGGAATAGAGGATGTACGACCAAGTGTAGAGAGCCTTCTGGATGAGCTGGAAAGTTCTGTGCCCTCACCCATTCCGACACCATTGATTGTGTCAGTTGGACAAACCGATGGACAGGAGGAAACACCAGCACAGCAGCAAGCCAGAATGTCTGCCTCCTCTGCCACACGAGAGCTGGATGAGCTAATGGCCTCCCTGTCTGACTTCAAAGTCCAAAGCAATATCCAGTCCCAGGGAAAGACTTCTCCCACGGGTCCCCCCAAACCAGCCAACAAGCTGGACAACATGCTGGGAAGCCTGCAGTCCGACCTCAACAGACTCGGGGTCCAGACGGTGGCTAAAGGTGTCTGCGGAGCCTGCAAGAAACCTATTGTTGGACAGGTGGTGACTGCCATGGGCAGAACGTGGCACCCCGAGCACTTTGTGTGCACCCACTGCCAGGAGGAGATAGGCTCCAGGAACTTCTTTGAGCGTGAGGGGCAGCCTTACTGTGAGAAAGACTACCATAGCCTGTTCTCACCACGATGCCACTACTGTAATGGACCCATACTGGATAGAGTAGTGACTGCTTTGGACAAGACTTGGCATCCAGAGCACTTCTTCTGTGCCCAGTGTGGAGCCTTTTTCGGACCAGAAGGTTTCCATGAGAAGGATGGAAAGGCGTTCTGCAGGAAGGACTACTTTGACATGTTTGCCCCTAAATGTGGTGGCTGTGCCCGCGCCATCCTGGAGAACTACATCTCTGCTCTCAACTCACTCTGGCACCCTGAATGCTTCGTCTGCAGGGAGTGCTTCACCCCATTCATAAACGGCAGCTTCTTTGACCACGAGGGCCAGCCGTACTGTGAGGCGCACTACCACGAGCAGCGTGGCTCGCTGTGCTCCGGCTGCCAGAAGCCCATCACCGGTCGCTGCATCACAGCAATGGGCAAGAAGTTCCACCCAGAGCACTTTGTGTGCGCCTTCTGCCTCAAGCAGCTTAACAAAGGCACCTTCAAGGAGCAGAACGACAAGCCCTACTGCCAGGGCTGCTTTGTTAAACTCTTCAGTTAGACTGTGGGAttgtgtataaatgtgtgtgtgcacgcctctacacatttatttacatgTCTGAATGCACGTGTGGATGTGGGTGCACTCACATGTCTAGCATGTATGAGTCAGTGAAGTAGTTTTTGAGAATGAGGGCGTTGGTGTGCTAGTGAATCACATCATTAGGGTGAGAAAGGTCTTCTTCTATTGACCGTTCCCTGGCTGTCCAACCTATCAGGCTTGGCATTTCATACTTTTGCTGAAGAAATTTTTAACAGAGCCCAAAGAGATTTTCATTTAgagtttttctcctgtgtgcaGCAAAGAAAACACGCTAATTTACccatatgtgtgtgcatatgtgagcATATGGGCATCAAATTAAGATTTCCTCAGAGCCTTTATTTGTAAATGCAGGGCAAGATCCTATGGTGGTTTTATGCAGATATAAGACAGCTGCTTGATTGCATGGACCATTGACTTAAACAGTTTTGAGAATATGTTGAGTGTTGAATACATAGTGCTTGGCCAATGAGTGTTGGAATAATCTatgaaaaatatgtatttttgtagctttgaaaacttaaaaataaccatgatatatgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagaacttCTCCTTCACTTCTTTAAAATACCAGTTCAAACTCTGCACACTCCAACCACAGATCTCTTGATGAGACCGTCTTAAAGTGCATTTTACAGGTGTCTGCAAGATATTAGCTAGTCCTTATTTTTCTACTATTTTACTATGAAAATAAACCCAgatgttttctcagtttcacCAAACATTACACTCACATTTCTGCTCTTGTACGTTGATTATTTCCCACTGGGAGTGAAATCAAACTTTAGAAAGTCACTATATAGAACTTTTGTAGCAACTTGGAACTTCATTTTTACTTTCCTACTGCAAAGTGTGTACTATGGCATTTTACATAAATActgttgaaataaaatgaaacggTTGCGATTGATGATGGCAAAAAGTAGGTCTTTAAGAATAACATATGTACTATGGTTATTAATGTTGAATTTATGGTGCAATTTAAAACAAGCCAAAACAAAGTTGATTGTCTTTACTCCAGATTAAAAGTGGAGATTTTCCTGCTCTATTTACCCACACAGAATAAATTCAGAAGAATTCAATTCAGAACAAATGATGCTTCAGTTTAACATCTTTTTCATATGTTACTATTGCTACTATTGTGAATTTATCACTGTATTTAATCTATTAATAAGGCTGGtgcaacatttaaaatatggtTGTGCTTTTGGATTAGAAGCATGTTTTCTTTTACATGGAGTTATATCAGCACTAGCTGCCAGTTGCTGTTACAATCAGAATCTAAATTTGTACACCTGTAATATGCTCGACTTTGTGACCGAACTGTGTTTTGTCACTGTTTgatggaaatatatatatttttgagcTGTTTGGGCTCACACTGATATGCAAAGAGCTGGCTCTAATGACATGTAGGCTAACAATAGTTGATCCTGTTCTCACACACAACACGTACCAGCTTTGATTCCAGTGTGTCAGGAAGTGCAGccctctttatttttattatgagTCATAAACTATGATCCTGCTGTCTGAGTTGATGTCAGCACTTGGCTCACTGATGGAAGCTGGATGTTGGTGTTAGCTGGTCAGGAATCAGTATACAACACCAAGCCAGGCcaagcatctagcaacatttATGTAATGACtaatttcaactttattttacttgtagCTCTGTTTTGTCACATATGAGACAAAGTGATTTTTGATTTGACAATATTGCTCGTCTTTAATTTGATCACTATGTGTGCACCTAGTGAATACACAGTATCCACATTGTTTTTACTTTGAGAAAATGTTTGCTTCTGTGCCAAATGTGTCAATGCAATAAGGTCTTATACACTGTGGAGTTCTCAACTTTTTCCTGTGATTTGACTCTTTATGTGCTGAACTCTAGGAGAGGCTTCGTCTGCTGTGGTGCATCTTAACTCCGAACACCCAAAAGTTTACACTGTAATAGACGAGCCCAGGAGAGTCATTCAGCAGACAGTATAGtgtacacttgtagctgtttcAGATTTACAGAAAGTAGCAGGGGTAAATGAACAGATGTGACTTTATTTTGCCCCATGTATATTTATCTGCTTACAGTATATTGCCTTATAGTTTTTGCTTCTGTCAAagaatttgtaaaaaataaaatcaaagccTTTTACCGTTAATGAGATAACGTGAACTTTTGCTTTGTAAATGGAGACATTCATGTGAGCTTTCACGATTTGAATATTTTCATGATCCACAAATTTGACTGACTGTGTGGGTGGGGTGTATGTGGGTCCTGATTACTGACTGATTATAACTGctgcaaataaaataagaactttatttctgccattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50183 lncRNA upstream 102348 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA upstream 116424 10997230 ~ 10998833 (+) True G37397
TU50154 lncRNA upstream 171631 10936683 ~ 10943626 (+) True G37383
XR_005638986.1 lncRNA upstream 185870 10928504 ~ 10929387 (+) False LOC120557560
TU50148 lncRNA upstream 185873 10928477 ~ 10929384 (+) True LOC120557560
TU50343 lncRNA downstream 197298 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 199644 11347086 ~ 11347671 (+) True G37522
TU50345 lncRNA downstream 201694 11349136 ~ 11349368 (+) True G37523
TU50346 lncRNA downstream 202108 11349550 ~ 11349773 (+) True G37524
TU50348 lncRNA downstream 206834 11354276 ~ 11354743 (+) True G37526
XM_039796504.1 mRNA upstream 11596 11100133 ~ 11103661 (+) True myl2a
XM_039798353.1 mRNA upstream 17207 11054190 ~ 11098050 (+) False cita
XM_039798352.1 mRNA upstream 17207 11054190 ~ 11098050 (+) True cita
XM_039798354.1 mRNA upstream 17207 11054190 ~ 11098050 (+) False cita
XM_039798012.1 mRNA upstream 62054 11051110 ~ 11053203 (+) True LOC120557557
XM_039796696.1 mRNA downstream 2271 11149713 ~ 11152286 (+) True rplp0
XM_039796697.1 mRNA downstream 2707 11150149 ~ 11152286 (+) False rplp0
XM_039796698.1 mRNA downstream 6108 11153550 ~ 11156414 (+) True LOC120556881
XM_039797722.1 mRNA downstream 9266 11156708 ~ 11167806 (+) True r3hcc1
XM_039797723.1 mRNA downstream 9266 11156708 ~ 11167806 (+) False r3hcc1
TU50184 other upstream 117120 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 805261 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2292526 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2292949 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2298860 8816325 ~ 8816397 (+) True trnar-acg_14
TU50347 other downstream 204636 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 243297 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 632736 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1105624 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 1127318 12274760 ~ 12278624 (+) True LOC120557851

Expression Profile