RNA id: XM_039797722.1


Basic Information

Item Value
RNA id XM_039797722.1
length 2519
RNA type mRNA
GC content 0.46
exon number 9
gene id r3hcc1
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11156708 ~ 11167806 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAgtaactttgagcgtggcatggttgttggtgccagaagGGCTGGACCCGTCCCTCTGTCCACCCTGGCGTTTCCTTGTTTCGATGGCATTTATCTTCCAAAGCAAGAAAATAAATTCGTGCATCACGTCAAGAATGACCTGGAAATATACCAACAGAAAAGCAACCGCAGGAGCGTGCTCCTGTTCCCCCCTCTACCCAGCAGGCTGCGATACCTGATCCATAGGACCATAGAGGACCTGCCAGAGCTCACCACCTTCTCAGTAGGGGAGAGCTGGTGCCGCAGGGTGGTGGTCTGCCATTCTGAGCTCAGGGGTGAAGTAGAGGAAGACAGTGGCTGGGAGAGCAACAATGGCCTGTGTGAAGATCCCCTAAGAAGCGGGGAGGAGACAGATGGCAACACAAAGCCGAAGTCTTCGATCCCATCGCGAAGCAGAGGACCTAAGAGGCCGGACAAACCCCTTTACATGCCACGAGTTGCCCGGGAGAGACTGTCCTTACAAAACTCACACGGACCCTCAGTAAACCAAGAGTTGCCCAGTCCAGCCTCTAGTAGCTGTGACTGCCTCGGCAGTCAATCGGACTCTTGTTTCTGTCCCGAAACtacagaaaaaacaaagtcCACATGCACATCCAGGCAGGAATGTGTCCCCAGTGTAGCAGAGGGTGTCTTCAACCCTGTTGCTGACAGTTCAGCACTTTGTCCTCAGGAGGAGAAACAAAAGGTGGTGCATGAAGCTGAGCCCCTAGTCTGGGTACAGACCGTGTCCTGCTTCAGTGACATGACTCTGGAGGAGGATGAGAAGGGCAAGGAAGACATATGCACAGGCACCGATGATGTAACTGAAGAGATCAAGGCACATCTGAAAGAGACCGTAACTGTTTCCATTCAGCACGTTGAGAATGACTACTCCTCTTATGAGAATGTGTGCATCGGCCCGGAGACGTTTCCCCACGTGATCGAGATCTACGGCTTCCCACAGTGTTTCAAAACCGATGACCTCCTGGATGCTTTCACAGACTACAGTGATGGTGGAATGAAGATCGAGTGGGTAGATGACACACATGCCCTGGGGATTTTCTCCAGTGAGACGGCAGCACTCCATGCCATCTCCATCTGCCATCCAATGCTGAAGGCAAGAGCACTGGCTCAAGCGAGTAAAAAAGCCAAAGGCAAGGCCATCAGACGGGCAGAGTTTATCCAGCCAGTGAAGGAACGTCCTAGGACAGACTGTGCTGTTGCCAGGCGGATGGTGACCAGAGCCCTGGGGCTGCAGGGACGAGGCAGAGTGCAGCAGTACTGAAGGGAATTACCAACGCTGTTGGCTAACACAGAAAGGTCCAGCAGAGGTCTGTCTGCCTCCATTCATTGGCCCTCCGTAGAGGCTCCACAGTGGCCACAAACGGCTAGCAGATAATGAAGAGTGACTGCCGTCCAGCACGGTTTGCCTGCTTCACTGATCGGTGAATGCGTTTGCATGGTGAAGAAGGAGACTGCCACACATCTGCTAAATCCAGCCTGCTGAAGTGTCCCTGACGCTGGTGGCGAttcaccagactcaaagttgCCATTCTGTAGCTGAACCTGGCCCTTTTGGACATTATTGTTTTGGTTCCTGTTGTTCACTGTTAGGATCACTAATTGTAAAACAAAGCTAAATTCTGAAAGGGCCTAATGCAAATGGTGATTTCATATAGAAAATGCACTGGAGCAAACTGGAGAAGTTCCTAgcttgttttgatttgattgcATGTTGCCTTAAAACTAAAGTGCTTAAGTGTTTAATTTCCAGACAGGAATATTTTGTTTCCTCCTTTCCCAGGTGATGCAGGACTGGTTGCATAATTCTCTGTAAGTAGTAATTATTTTCCAACTTAATGCTGAAATACTCCACAGATTAATTTTTAGGATTTAGTTGGAAGAAATCTGTTACATTGTCCACTTTAGTTACAGCCAGATTTTTATATGGAGTGCACAACTCTAACTgacaaatgtaatgtaaatccATTAACAGAATCAGATGTGCTAAGAAGATAAAactaaatattgtttttaaaagccAGCTTTTCAATTGACAAACACATTTTGCAAAGGAAAACTCATGCAACTGCAATGTTATGCTGGACTCAATAGATattttctaatgtttttttagttgatttttcaaaacttttttttgcaaacaaGTTGCAAGATGTTTaagtttttaatatttattttgttcctctaaatgaaacaaaacaacCTTTTTAGGATTGTTGCCTGTTGTGTTCAAGTTCTTTGTCAGTCCTCATTACACAAAACTTTCAGAGGTTTTTGATCAAAAGTTTGAGCTTTGAAACTTGGAATGTTAGGTCCTTTGTACTTGTTACTGTACTGTCATTTCTATGTAATatacctttttcacggcagacatgttgacatgtcatagtaggaaaagcacaggtgtattcaaacccattaatgatgtctgcattccacttaggagaggccctggtattgtgcatgctgactcaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50183 lncRNA upstream 143799 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA upstream 157875 10997230 ~ 10998833 (+) True G37397
TU50154 lncRNA upstream 213082 10936683 ~ 10943626 (+) True G37383
XR_005638986.1 lncRNA upstream 227321 10928504 ~ 10929387 (+) False LOC120557560
TU50148 lncRNA upstream 227324 10928477 ~ 10929384 (+) True LOC120557560
TU50343 lncRNA downstream 176934 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 179280 11347086 ~ 11347671 (+) True G37522
TU50345 lncRNA downstream 181330 11349136 ~ 11349368 (+) True G37523
TU50346 lncRNA downstream 181744 11349550 ~ 11349773 (+) True G37524
TU50348 lncRNA downstream 186470 11354276 ~ 11354743 (+) True G37526
XM_039796698.1 mRNA upstream 294 11153550 ~ 11156414 (+) True LOC120556881
XM_039796696.1 mRNA upstream 4422 11149713 ~ 11152286 (+) True rplp0
XM_039796697.1 mRNA upstream 4422 11150149 ~ 11152286 (+) False rplp0
XM_039796695.1 mRNA upstream 9266 11115257 ~ 11147442 (+) False LOC120556879
XM_039797528.1 mRNA downstream 51583 11219389 ~ 11226582 (+) True aggf1
XM_039797530.1 mRNA downstream 51604 11219410 ~ 11226582 (+) False aggf1
XM_039797527.1 mRNA downstream 52188 11219994 ~ 11226582 (+) False aggf1
XM_039799105.1 mRNA downstream 68901 11236707 ~ 11243365 (+) True LOC120558172
XM_039799019.1 mRNA downstream 95704 11263510 ~ 11266070 (+) True LOC120558115
TU50184 other upstream 158571 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 846712 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2333977 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2334400 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2340311 8816325 ~ 8816397 (+) True trnar-acg_14
TU50347 other downstream 184272 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 222933 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 612372 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1085260 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 1106954 12274760 ~ 12278624 (+) True LOC120557851

Expression Profile