RNA id: TCONS_00075298


Basic Information

Item Value
RNA id TCONS_00075298
length 746
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_037671
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 11571312 ~ 11572354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGATAACGACGAATCACACGCCACACGCACAATGCCTGCAGATGAAAGGGTTTTGTTCGTTCGGCTCGCGTTACGCAGATGCAGACACTCGGCAGGAAAACAGCAGAGCAGCGGCGGCACTCATCACTACTGTTGTCCCGCTGTTTACTGGAGCTTTAACACATGGAAACTATCAGTACAATGTGTTAAAACACAGTACAATGTGTTGATTTGCTTTGAGGAATGACTACTTGTGAAACTATAGGATTATAATATAAGATAGGCCTACAAATGTCGCGGTTATATCGTGTGTTATGAATTCACGAATTATGCTTATTGTTTTTACCAGTGGCACTTATACTGTCTGCAAGGGTATATCATTTTATGTATTGTCTTATTTAATAATGTTAccttatttgtgtaataaattTAGCCTacaaaattcttgagtttttttaggacagctttattgttttttgtttaattaacttaaaattgttttaagttaacttaagttaacttaattaatttgcatTGGAAGGACATTTTGTGCactcattatttatattttttgctcattcaaactacttaattaaaatgagctgaaaaacacaattcttcagatttCATGGGAcaagttaattgttttatgttcaatccacaaatttgttaaaaatgttaagttaacttaatttgtgttgggacaacatgaatgaaatgtgtggaactctgcattttcTCCAGTGTATATTCAGACAATTAAAG

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0071805 potassium ion transmembrane transport biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0098659 inorganic cation import across plasma membrane biological_process
GO:0070884 regulation of calcineurin-NFAT signaling cascade biological_process
GO:0140115 export across plasma membrane biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0106056 regulation of calcineurin-mediated signaling biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0098739 import across plasma membrane biological_process
GO:0006813 potassium ion transport biological_process
GO:0099587 inorganic ion import across plasma membrane biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005391 sodium molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity molecular_function
GO:0015079 potassium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073972 lncRNA downstream 10973 11557206 ~ 11560339 (-) True XLOC_037670
TCONS_00073971 lncRNA downstream 11203 11555076 ~ 11560109 (-) False XLOC_037670
TCONS_00074962 lncRNA downstream 1200687 10368380 ~ 10370625 (-) True XLOC_037663
TCONS_00073926 lncRNA downstream 2200446 9355372 ~ 9370866 (-) True XLOC_037651
TCONS_00073922 lncRNA downstream 2282242 9286419 ~ 9289070 (-) True XLOC_037649
TCONS_00075300 lncRNA upstream 23738 11595987 ~ 11598944 (-) False XLOC_037673
TCONS_00073976 lncRNA upstream 72980 11645229 ~ 11655031 (-) True XLOC_037673
TCONS_00075301 lncRNA upstream 250130 11822379 ~ 11855293 (-) False XLOC_037675
TCONS_00073979 lncRNA upstream 250130 11822379 ~ 11855305 (-) False XLOC_037675
TCONS_00075302 lncRNA upstream 504594 12076843 ~ 12171775 (-) False XLOC_037677
TCONS_00073970 mRNA downstream 10880 11554405 ~ 11560432 (-) False XLOC_037670
TCONS_00073969 mRNA downstream 10885 11554359 ~ 11560427 (-) False XLOC_037670
TCONS_00073968 mRNA downstream 11202 11554089 ~ 11560110 (-) False XLOC_037670
TCONS_00073964 mRNA downstream 19704 11548233 ~ 11551608 (-) False XLOC_037669
TCONS_00073963 mRNA downstream 20601 11548233 ~ 11550711 (-) False XLOC_037669
TCONS_00073974 mRNA upstream 4253 11576502 ~ 11587070 (-) True XLOC_037672
TCONS_00073975 mRNA upstream 25251 11597500 ~ 11655031 (-) False XLOC_037673
TCONS_00073977 mRNA upstream 92548 11664797 ~ 11676491 (-) True XLOC_037674
TCONS_00073980 mRNA upstream 334521 11906770 ~ 12034444 (-) True XLOC_037676
TCONS_00073981 mRNA upstream 687220 12259469 ~ 12269966 (-) False XLOC_037678
TCONS_00073967 other downstream 19608 11551604 ~ 11551704 (-) True XLOC_037669
TCONS_00073965 other downstream 20915 11548772 ~ 11550397 (-) False XLOC_037669
TCONS_00073961 other downstream 724763 10845918 ~ 10846549 (-) True XLOC_037667
TCONS_00073935 other downstream 1765993 9743559 ~ 9805319 (-) False XLOC_037657
TCONS_00073978 other upstream 250130 11822379 ~ 11855305 (-) True XLOC_037675
TCONS_00073998 other upstream 1010017 12582266 ~ 12594717 (-) False XLOC_037682
TCONS_00073999 other upstream 1012394 12584643 ~ 12594723 (-) False XLOC_037682
TCONS_00074000 other upstream 1012654 12584903 ~ 12594705 (-) False XLOC_037682
TCONS_00074018 other upstream 1313503 12885752 ~ 12887858 (-) True XLOC_037687

Expression Profile

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