RNA id: XM_026944377.2


Basic Information

Item Value
RNA id XM_026944377.2
length 3368
RNA type mRNA
GC content 0.43
exon number 20
gene id gpcpd1
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8956429 ~ 8975562 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttgtttgtttgaatttaaGACTTATACAGACTAGGATTCTAAATGGGAGAGGTTAACGaatttaataaactaaacattCCACTGTATATCTAcgtaaattttaattttagttcaCTACTGTTTACTGAGAGGTTTTTACGGCTCGCTGGCGCGCGCACTGAGGCGTGGCTTATTGACAGTGCACCACGCTGCGGTCTTTATCATTACTCTAGTTAAAAACATGGAGCGGTGTACACTCAGCTAGCATCCGACTGATGCTGACTTTGTATAGTCTGGCTGTGAATACCAGTTTTTCGTCAACGCTCAGTAGCAGCCATGGACTGCATTCAAGTGACGCTTGCTGTTAGAGGAACTACATCGTTTGGTGAAGTGATAGCAGTAGTTGGAAGCTGCGAGACTCTTGGCAGTTGGTGTCATCAGAAAGCACTGCCTCTACAACCCGCAGAGGAGGATGGCAATCTATGGAAAAGGACCATCACAGTTTCAAAGGGAGTAAAAATCAACTATCGCTATTTTAAGGGGTTCTTCCTGGAATCGAAGAATGCAGGTGGTCCATGTCAAGTCATAGTCAATAATTGGGAGACCCATCAGCAGCCTCGGTCATTGAGTTCCTCAGAATTGGACCATGAAATTGATGATGGGCAGTTTGGATTCTATAATGGTGTTGAGTGTGTGGACTCTGGCTGGTTAACATGTCAGACAGAGATCCGTCTACGTCTCCATTACTCTGTTAAGCCACCAGTGTCCATTACCAAGAAGAAATTCAAGACATCTCGCTTTAGACTGAAATTGATGCTGGAGGGTATtgaagaggaagatgatgaggaGAGCCCTTCATCCTGGCACAAGATGACTACCACACTAGAGATTAGTATGATCAGTGATAGTGGCTATAAGTCCCGTCACTCCCAGCCAGAGTGTGGCTATGCCCTGGAGCCAGCGCTGTGGACTGAGTACAGTATTCACACTATGGAACCTGACAACCTTGAGCTTGTGTTTGAGTTTTTTGAGGAGGACCTAAGTGAAAAGGTCGTTCAGGGTGACATCCACCCAGGTCATGTTGGCACCGCCTGCCTCTTATCTTCTTCTTTTCTGGAAAGTGGCAAGGATATTGGAGTGGTTACCCTCCCAATCATGAGCAGAAATTCCAGGCAGACCATTGGCAAAGTCAGAGTGGACTACCTGGTTATTAGGCCTATTCAAGGCTGTACATGTGACATGAGCCAGTGCTACACTAAGTACTGGCGAAAGAGGAGTGCTCTGGATGTGGGCCACAGAGGAGCAGGGAGCACACATGCTGCCAAACATCACAAGATCAGGGAAAACACAATTGCCTCATTTCTAAGTGCTGCTAATCATGGTGCTGCCTATGTGGAGTTTGATGTCCACCTGTCCAAGGACTTAGTTCCAATTGTGTACCATGATCTTACATGCTGTATTTCCACTAAGAAGAAAAATGACAAGAATTCTATGGTGTTGTTTGAAGTTCCTGTGAAGGATCTGACATTTGACCAACTTCAGCttcttaaaCTTGCCCACTCTACAGCTATGAAGGTGCATGATCACAAAGATTTACAGGATGAGGAGGAGTATATAGATGAACATCAGCcatttccttcactttctcaGATCTTTCAGACTGTTCCAGACAATGTAGGATTTAATATAGAGCTGAAGTGGATATCCCAGATGAAGGATGGCTCGTGGGATGGAAACCTGTCCACTTACTTCAACATGAACCAGTTCCTGGATGTCATCCTCACCTGTGTGCTCCAGAATGCTGGAAAGAGAAGGATTGTCTTTTCTTGTTTTGACCCTGATGTGTGTGCGATGGTGCGGCGGAAGCAGAACAAATATCCCATCCTGTTCCTGACTCAGGGTGTGTCAGAGGTCTACCCTCAGCTGATGGATATACGCTGTCAGTCCACACAGATTGCCATGAGCGTTGCTCAGAGTGAGAACATTCTGGGTATCAGTGCTCACACCGAGGACCTGCTGCGTAACATGGACTGCATTACAGAGGCCCAGTCTAAAGGCTTGGTGGTCTTCTGCTGGGGAGATGACAACAATGACCATGACAACAGGAGGTTGCTCAGGGAGAAAGGCATCGATGGCCTCATTTATGACAgAATTTGTGACGACCAGACTGAGCAGCCCAATATCTTTAAAGTAGAAGAGAAAGTGTCTATAAAAGAGGTGATTCCCGAGGAGACGCTGAAGAGTTGTGCCTGCTCCACATACAGTATTTCCTGCTCAGCTGTGTCTTGCTCAGGTGAGGTTCGAGCAGGCAGCGGCGAGTCAGACTCAGGCCTCAGCTCATCTTGAGCACACCAAAATTCCAGCCTTTTGTAACACagtaaaacacactcacacacatatgcaccTTCTCCCTGGGTGGTTTTCACCTAAGCAATGTTTCTGCCAAATGATGACTTATGTAATGGCATATGCTTGATCACTAGATGAAAAAATATCTTAattatattaaagaaaatacTCAGTATATTTCAAATGTCCACATGGGCATTCCTGATGTATTTACTGCTACTTGTTGTAAATCTAAGTGCTTTTTATTTGGATTATATTAGCATTgccttgtgatttttttttttctttattggaATACCACCATCACAGTAATGGTTGCCATAGTTAATGATTTTATTCTCCTTAAGCTACTTCATTCCTCTctgtatttacaatatttaacattGTTTACTAGAACGTGTATTACAGCATCATAAACTTAAATTATGACCTGCAGAGTGTCACATTTTAAACTTACAAAACTCACTATAACTCTTTGGGCTTTTACATATTGCAGAATTTGTTACTAAACTACAAAATTAAGTGCTCAATATAGTATAGTATCATATACAAATCTAATCAAAAAAATCTGTGATTCAAAACATACCCAAGTATTTTTGAGAGCTtacaagtaaaaatataaaaacctgAAGAATGCTGAACATATTAATGCACAAAACATGCAAATGGGCATAAGTAAAGTACAAAGCCTAATGCTGAGGAGTCACAGAAACTAAAATTAAACACTAGGCTGCTGTGCAGTTTAAAGTATTCGAGAAAGCGCTGTGTATCGTGATTCTTATGCTCCTGAACACCGCTGCTGTAAATCTCTCTGTGCTGAATGTTAGCATGGCCGTGTCTCTGTGTTGGAAGTGTTCTGTTCAAGTAGGGGCCTAATTATTTCTCCCACTCTGCGGAGCAATGGGGCCATGCTTCATATGTCTTAAACAAGCTCCACAGAGCTCAAAACACTGAGCTCACTGGGTGAATGCACTGGATAATTCACTGCATAATGAGGACCCGCTGAAATGAATACTAAAACAActaaaataaagttatt

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006071 glycerol metabolic process biological_process
GO:2001070 starch binding molecular_function
GO:0008889 glycerophosphodiester phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346232 lncRNA downstream 319104 8636495 ~ 8637325 (-) True G292231
TU346065 lncRNA downstream 395700 8560507 ~ 8560729 (-) True G292076
TU346044 lncRNA downstream 397573 8558351 ~ 8558856 (-) True G292056
TU345996 lncRNA downstream 489412 8466809 ~ 8467017 (-) True G292009
TU345948 lncRNA downstream 530959 8420416 ~ 8425470 (-) True G291969
TU346602 lncRNA upstream 246454 9222016 ~ 9255248 (-) True G292573
TU346778 lncRNA upstream 431887 9407449 ~ 9407913 (-) True G292695
TU346782 lncRNA upstream 434681 9410243 ~ 9415603 (-) True G292697
TU346786 lncRNA upstream 440829 9416391 ~ 9416590 (-) True G292701
TU346921 lncRNA upstream 636981 9612543 ~ 9612781 (-) True G292807
XM_026944506.2 mRNA downstream 1855 8946577 ~ 8954574 (-) True napbb
XM_026944505.2 mRNA downstream 5032 8946577 ~ 8951397 (-) False napbb
XM_034313910.1 mRNA downstream 53324 8898066 ~ 8903105 (-) True trib2
XM_026944329.2 mRNA downstream 71530 8705412 ~ 8884899 (-) False LOC113545152
XM_026944328.2 mRNA downstream 71530 8705412 ~ 8884899 (-) True LOC113545152
XM_026944664.2 mRNA upstream 15411 8990973 ~ 9002433 (-) True trmt6
XM_026944676.2 mRNA upstream 29098 9004660 ~ 9016751 (-) True fermt1
XM_026944624.2 mRNA upstream 290312 9265874 ~ 9327508 (-) False pak7
XM_034313863.1 mRNA upstream 290312 9265874 ~ 9326624 (-) False pak7
XM_034313862.1 mRNA upstream 290312 9265874 ~ 9304055 (-) False pak7
TU346069 other downstream 358286 8584217 ~ 8598143 (-) False fkbp1b
XR_004580143.1 other downstream 1288643 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other downstream 1288643 7665134 ~ 7667786 (-) False six6b
XR_004580140.1 other downstream 1435588 7505961 ~ 7520841 (-) False ppp2r5ea
TU344922 other downstream 2017953 6937468 ~ 6938476 (-) False xkr6b
trnae-cuc_39 other upstream 225478 9201040 ~ 9201111 (-) True trnae-cuc_39
TU346830 other upstream 512656 9488218 ~ 9491222 (-) True LOC113545281
XR_004580169.1 other upstream 533141 9508703 ~ 9516177 (-) False znf410
TU347081 other upstream 778937 9754499 ~ 9760663 (-) False lrfn2b
XR_003404605.1 other upstream 867807 9843369 ~ 9843472 (-) True LOC113545371

Expression Profile