RNA id: XM_026944676.2


Basic Information

Item Value
RNA id XM_026944676.2
length 2824
RNA type mRNA
GC content 0.44
exon number 15
gene id fermt1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9004660 ~ 9016751 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAATCCGCGTGCAGCTGTGACACAGTTCCGCTAGTTTCCTGACTGTTTGGGCTACATCCAAAACCACACACTACCCTACAAAACAGTAATAGTAAAAGCTATTTTGTACCAAATAGCGTGTCAGAAAGGACTGTGGCGTATTATTTCGTCATGTAGGTGTTACTTAGGgtctattattttaatataatcttCTGGTAGTAGTCACTTCCTTAGCATAGCCTACCTGGAGGGAGGGGTCTTTCCTCGCCTGCTCACCTGGAAAGCGGCTCGGTCCCATTCCACACTGGACGAGAGAAGAAGTGTGAGCAGGATATAGCAGACGATTTGTTTTGGTGAAGCCATGGTCACTGCTCCCGAGTATGCACAAAACACATGGGAGCTGTCGGTCCAAGTGGACCAGCGGGAAGGAGACGAGACTATGAGGTTTAAAATTCGGGTCAAGGGAGACCTTCACATTGGAGGACTTATGCTCAAACTTGTGGAGAAGATCAAGGCTCCACAGGACTGGTCAGATCATGCTCTGTGGTGGGAAAAGAAGAACTGCTGGCTATTAAAAACCCACTGGACACTGGATAAATATGGTGTGCAGGCAGATGCTGACCTCCGCTTCACCCCCCAGCACAAAGCTCTGTGTCTGCAGCTACCCAATATGAAGACTGTCAAACTGACAGTCAGCTTCTCTGCAGTGGTCTTCAGAGCTGTAGCAGAAATCTGCAGAGCACTCAACATAAGAAGATCTGAAGAGTTGTCCCTCCTGAAACCACCAGATgatccaaaaaagaaaaagaaaaaagacaaggcTAAGGAGATAGAAGATGACATCATAGACATGGATGTTGTTGGTGGGACAGtCGGAACTGGCCACTACAGTAAGACCATGACTGCAACATATGACCCTGATAATGGGACCCCAATGACTTCCACAAGCCTGTGGTTTGGAGAAAACCATCTCAGTTCTAGCCAGCCTAACGTGCCTCCAGATGAGCTGGCCAAGATGTATCAGCCTCTCAGTATGGAGGACAAAGCTGTCATCAATGCAGGGTGGCTGGATTCCTCAAGCTCTTTAATGGAGCAGGGCATCCAAGACAATGACAGACTCTTACTACGCTTCAAGTATCACTGTTTCTTTGACCTTAATCCAAAGTATGATGCAGTAAGGATTACGCAGCTGTATGAACAGGCACGCTGGGCCATTCTGCTGGAGGAGATTGAGTGCACTGAGGAGGAAATGCTGATGTTTGCCTCTCTGCAGTATCACATATGCAAACTGACCATGTCAGCCAAACCTCTGGACTTTTCCAACGAGCCTGAGATAGACGAAGTGGAGGCAGCCCTCTCTCATTTAGAGACAACACTTGAAGGACGGAGCACAGACAAGATTCTGgAAGACATCACAGATATTCCCAAGTTGGAAGACACTCTGAAACTATTTAGGCCCAAACGACTATTACGGACTTTCAAAGAGTACTGGTTTGTGTTTAGAGACACCAGCATTTCCtattacaaaaacaaagagTCAGCCAACGGGGAGCCAATTGAACAGCTACATCTGCGAGGATGTGAAGTTGTTCCAGATGTCAATGTGACAGAAAAGAAGTTTGGCATCAAGCTTCTGCTGCCTGTTGCGGATGGAATGAATGAAGTGTATATTCGCTGTGACAATGAGACACAGTATGCCAAGTGGAAAGCTGCCTGCATCCTGGCCTCTAAAGGCAAGACGATGGCATACAGCTCATACCGCACAGAGGTGAAGAACATCCAGTCCTTCCTGCAGATGAAGAGTTTAGCGCCCCCGCCTGGCCATGCTGCTCCTGATGTGGACTCTATGGACATGAATGCAGAATGCTTTGTCTCTCCACGATACGCCAAAAGATACAAGGCCAAACAACTGACCACACGGATTCTGGAGGCACATCAGAACATTTCCCAGCTTTCACTCATGGAGGCTAAAATGCGTTTCATCCAAGCATGGCAGTCTTTACCAGAGTTTGGCATTAAATACTATATAGTCAGATTCAAAGGAAGTAGGAAAGATGAGATACTGGGCATCTCGTACAACCGGCTGATCAGAATTGACATGGCCACACGCCAGCCAGTGACCACGTTGAGATTCGCCAATATGAAACAGTGGAATGTGAACTGGGAGATCAGACAGGTGACTATTGATTTTGACCAGGGTGTTACAGTAGCTTTCACCTGTCAGAGCTGTGACTGCAGAGTGGTTCATGAATACATTGGAGGCTACATTTTCCTCTCAACACGATCCAAAGATCAGAATGAAACACTAGATGAAGAACTCTTCCACAAACTTACAGGAGGCCAAGAATGATCCTGAAAAACCACTGAGAGTTTCAGATAGGCCTGGAGATTTCCGGCTGAACAAGAGCTTAAATGTATTCATCATGGCAGttttttcattgtttgtgtgcattttgtTAAATGGTAAGCAGACTTAACCAGCTTCCTTCCCAAGCCCTGTAGTACACAAGGCCACTCATGATctcatattaattatatttaatatgtttctgAGAGCTCCTGTTTGACAGGGAATCAGAGAGGTGAAatgacatcatgacatcattctcagtttttattttttagagggattttttttctttgttttgttgttttatatgttcacaagaaataaaacatgctacCAAAAAAGTATACAAAGGTATtatgaaatggaaatgaattttaacatttttttattaaagatgtaGCCCAAAACCCTGAAGATCAACACTGTGATTTGTATAATGTTGATCAAAAAAATATGCCGCCttcatgtataaataaaattgtgtttacattta

Function

GO: NA

KEGG:

id description
K17082 FERMT1, KIND1; kindlin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU346232 lncRNA downstream 367335 8636495 ~ 8637325 (-) True G292231
TU346065 lncRNA downstream 443931 8560507 ~ 8560729 (-) True G292076
TU346044 lncRNA downstream 445804 8558351 ~ 8558856 (-) True G292056
TU345996 lncRNA downstream 537643 8466809 ~ 8467017 (-) True G292009
TU345948 lncRNA downstream 579190 8420416 ~ 8425470 (-) True G291969
TU346602 lncRNA upstream 205265 9222016 ~ 9255248 (-) True G292573
TU346778 lncRNA upstream 390698 9407449 ~ 9407913 (-) True G292695
TU346782 lncRNA upstream 393492 9410243 ~ 9415603 (-) True G292697
TU346786 lncRNA upstream 399640 9416391 ~ 9416590 (-) True G292701
TU346921 lncRNA upstream 595792 9612543 ~ 9612781 (-) True G292807
XM_026944664.2 mRNA downstream 2227 8990973 ~ 9002433 (-) True trmt6
XM_026944377.2 mRNA downstream 29098 8956429 ~ 8975562 (-) False gpcpd1
XM_026944373.2 mRNA downstream 29098 8956429 ~ 8975562 (-) False gpcpd1
XM_034313592.1 mRNA downstream 29098 8956429 ~ 8975562 (-) False gpcpd1
XM_034313591.1 mRNA downstream 29098 8956429 ~ 8975562 (-) True gpcpd1
XM_026944624.2 mRNA upstream 249123 9265874 ~ 9327508 (-) False pak7
XM_034313863.1 mRNA upstream 249123 9265874 ~ 9326624 (-) False pak7
XM_034313862.1 mRNA upstream 249123 9265874 ~ 9304055 (-) False pak7
XM_026944626.2 mRNA upstream 249123 9265874 ~ 9303736 (-) False pak7
XM_026944623.2 mRNA upstream 249123 9265874 ~ 9303736 (-) True pak7
TU346069 other downstream 406517 8584217 ~ 8598143 (-) False fkbp1b
XR_004580143.1 other downstream 1336874 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other downstream 1336874 7665134 ~ 7667786 (-) False six6b
XR_004580140.1 other downstream 1483819 7505961 ~ 7520841 (-) False ppp2r5ea
TU344922 other downstream 2066184 6937468 ~ 6938476 (-) False xkr6b
trnae-cuc_39 other upstream 184289 9201040 ~ 9201111 (-) True trnae-cuc_39
TU346830 other upstream 471467 9488218 ~ 9491222 (-) True LOC113545281
XR_004580169.1 other upstream 491952 9508703 ~ 9516177 (-) False znf410
TU347081 other upstream 737748 9754499 ~ 9760663 (-) False lrfn2b
XR_003404605.1 other upstream 826618 9843369 ~ 9843472 (-) True LOC113545371

Expression Profile