RNA id: TCONS_00007782


Basic Information

Item Value
RNA id TCONS_00007782
length 3160
RNA type mRNA
GC content 0.51
exon number 12
gene id XLOC_004081
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17997403 ~ 18107447 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTGCGGCAGCAGTGGAGCCGGAAGGGGGAGCTGCGATTCCGTCCCCGCCTTCACGCTACAGGACAGCCCGGGGTCTAGCGCTGTCACAGCAGGCCTACTTCCGTCAGCTCTATcgcaaacattattattaaaaaaaacacaattacggCCATCCAAGCCTTCCAAGCAGCGCATTTGTGTGTTTTCCACTACGGCTCCTGTACAGGGTGGACTGACCTGTCATGAATGAGCCCATTGAAGGCGGTGCGATCTCGTTCGACGAGTATGTGCGGCAGAAGGCGCGCACTATACCTCAGCACCGCATGAAAGAGTTCCTGGAGTCGCTGGCCTCCAAAGGCCCAGAGGTGTTGCAGGAGTTCAGCCAGCAGACCAGCGGCACCACAACCACAATGGTGTACCAACAGGGTGCCAACTGCATCTACACGGACAGCACAGAGGTGGCGGGCTCATTGCTGGAGCTGGCATGTCCGGTTCAGGTGACATCGACACAGATCTCACCCCAGCTGGCTGCAGCTGTGCATCAGGCATCTGAACAGCAGATCCAAGTACAGGTGCAGATTCAAGGTGAGCAGGGTCAGACAGTGGGCCAGGTACTTCAGGTGGCTTCTCCTACCCAACAGCAGCTACAAGGAGTTACTACAACACAGCTGGTACAACAGGGAGAGCTCACAgaggaacaacaacaacagATCCAGGCTCAGCTGGTGGCAGCAGTTGCCGGAGGTCAGCAGATTCAGATCCAAACAGTGGAGGCTCTGTCCCCTCAGCAGCAGGGTTCCCCCAGGGAAGTGGACCGACGAACTGGAGCCTCGCCTGCCGTCCTCCAGCCTGCAAAGAAACGCAAGGTGGACGTCCCTACAGTTGTGTCCTACTCGCTCCCTCAAGGGCAGCAGCTGGCTACCGTATTGGCCATACCGCAGGGCCAACAGCAGGGCTACTTGTCACTTCGACCAGACCTGCTGACCGTTGACAGCACTCACCTCTACAGTGCCACTGGTACCATCACAGGCCCGGCCGGCGAGACCTGGACCATACCCGTGTACTCTGCCCCACAGCAGCAAGGTGTGGCCCACATCGCCATCCCACAAGAGGCCTACAGCACCGTGCAGGTCCAGGCCTCGCCAACCGATAAAGACAAAGACAAGATGATTATCGGTGCATCTCAGGCTGCAGGGGCAGTGGCAGTTCCAGTGTCCAGCTCAGGAGTGACCACTCAGGAGGAAGTTGTACATTCACTGTTTCCTGCGCAGTTTATGAATGGAAACATTCACATCCCTGTCGCCGTGCAGACTGTAGGGGGCGCTTATTCTGGAACAACGCAGGCCCTGCATATATGGGATccacaacaacagcagcagcacgTGCAGGATGGAGAAGTACAGGAACAACAGCTCCATCTGCAGGCGCAGACCGAGGCAGAGCCACAGGTAGAGCCTCCTCCTGAGCTGGTCCTCCCAAACACGCTGAAGCCTGAGGACGGGCTAGAGGTCTGGAGGCTTTGGGTTCAGCGCAAAAATGCTGAGCTggacaaaaatgaacaaaataagcTGGCACCTATTGGACGTCGACAGCCGCTGCGCTTCCAGGACGATCTTGTGTCGAGTTCAGTGGGAGAGTTGAACCTGGCTCTGTCCCTGATGACTCAAGAGGCCCGTGGGCTGGAGGGAGAGCTGTTCGAACCCGATTCATTATactatgtatttttatgtatacaGAAATACATGTTTGAGAACGGCAGAGTAGACGACATCTTCTCTGATCAGTACTATAGCCGCTTCTGTCAGTGTTTACACAAAATTTTGGAGGAGTGGAGGCCCAGTATTCATCCTCTTGGCTATATCATCCCAAGTCACGTGACAGAGGAGATGCTGTGGGAATGTAAGCAGTTGGGAGCTCACTCACCAGCCACTCTCCTCACTACACTGATGTATTTCAACACCAAGTACTTTCACTTGACCACAGTGGAGCAGCATATGAAAGTGGCCTTCTCCAAAGTGCTCAGACATACAAAGAAGAATCCCACCAACCCTAAAGACAAGAGCACCAGCATCCGCTACCTGAAAGGAGTTGGACCACACCATGTCGGACAGAAAGTGACTGATGACATGTACGCAGAACAGGCTGAAGACCCCGAGAACCCGCTGCGCTGTCCCATCAAGCTCTATGACTTTTACCTCTTTAAATGCCCTCAGACTGCTAAGGGTCGCAATGACACGTATTACCTGACGCCGGAGCCTGTAGTGGCACCCAACAGCCCCATCTGGTACTCCACTCAGCCAATCACGAGCGAGCAACTGGAGCACATGCTAACACGCATCATGATGGTGCGGGAAATCCAAGAGATTATCTCCATCACGCAGACCAGCGTTCAATGAGAGACGACGCTTAAGGGGAAAAGGAAAGAagtgaaagatggatggatggatccatGGATGGATCTCCAGCGTCATCCAAACAGACTGAATTACATTTCCTCTGCGGCATCTCTTTATATTCATCCACCACTAAAAGGAGAATCAAGTGGAGTTTTGGATGAGCTGGATTACGTGCATaaaagccttttgttttgttttgtttttagagacAGGAACTTCTTTCTGTTTGTTCGCCTAATGAAACGTATTCAGATCCCAGATCCCTTGATGTGTGCATTTCTCTCTTTCTGCCATGTATGTTACGCTCCATCCCTTCTCCCACTGTCCGGTTTCATTTTCTTTCAATAAGTGCTGAACTTTAAGGATCTGGTGGTTTCGAAGAATGATTTAAGGCATTTTTGTTTTGGTAGTGGACTGGAACACATCAGGTGTTTAAAAACATGGCCTCATCCATCTGTAACCGTTAACACATCCCTCGCTCGCCTCCGGGAGCTTTTGCAGTAGCAGAGATTGCGTACCTGAGGAGTGTATTATACATCAAGACTTTTTGgttctgtttttatttgatttttttttatatacatatatatatatatacactcacacatgcaTCTATGGTAATCTGATATGTATTGATATTATAGTGGTGCTGGAGAACTGAAGCCTGTGTTTTCAAACATGCCTTTTTGTACAGTGAATCACCTGTGGTGTGTTGTCTTTGAGTCTTTCTGCAGTCtggcacacaaacacaacacacaggCAGAATAAATTTCTTTGTAAGTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8204 Orthologous to human QRICH1 (glutamine rich 1).

Ensembl:

ensembl_id ENSDART00000040171

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007781 lncRNA downstream 20338 17974191 ~ 17977065 (-) True XLOC_004080
TCONS_00007776 lncRNA downstream 194352 17796609 ~ 17803051 (-) True XLOC_004077
TCONS_00008462 lncRNA downstream 767550 17223850 ~ 17229853 (-) True XLOC_004073
TCONS_00007770 lncRNA downstream 849942 17144309 ~ 17147461 (-) True XLOC_004072
TCONS_00007769 lncRNA downstream 899473 17094233 ~ 17097930 (-) True XLOC_004071
TCONS_00007788 lncRNA upstream 126367 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007789 lncRNA upstream 128741 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00008463 lncRNA upstream 529097 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00008464 lncRNA upstream 533912 18551830 ~ 18556014 (-) True XLOC_004088
TCONS_00008466 lncRNA upstream 832008 18849926 ~ 18852369 (-) False XLOC_004092
TCONS_00007779 mRNA downstream 15976 17965098 ~ 17981427 (-) False XLOC_004080
TCONS_00007780 mRNA downstream 15982 17966118 ~ 17981421 (-) False XLOC_004080
TCONS_00007778 mRNA downstream 32878 17959507 ~ 17964525 (-) True XLOC_004079
TCONS_00007775 mRNA downstream 194266 17793376 ~ 17803137 (-) False XLOC_004077
TCONS_00007774 mRNA downstream 194332 17785182 ~ 17803071 (-) False XLOC_004077
TCONS_00007790 mRNA upstream 231891 18249809 ~ 18253111 (-) True XLOC_004083
TCONS_00007791 mRNA upstream 252395 18270313 ~ 18283886 (-) True XLOC_004084
TCONS_00007792 mRNA upstream 266030 18283948 ~ 18323059 (-) True XLOC_004085
TCONS_00007793 mRNA upstream 325972 18343890 ~ 18384534 (-) True XLOC_004086
TCONS_00007795 mRNA upstream 377961 18395879 ~ 18468570 (-) False XLOC_004087
TCONS_00007777 other downstream 88721 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 1352890 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 1660517 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 1869725 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 1939096 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007803 other upstream 574081 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 1162534 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 1398260 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 3562008 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 3734557 21752475 ~ 21752589 (-) True XLOC_004115

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000058_04748480_04757498.mRNA True 2353 mRNA 0.53 11 CI01000058 4748424 ~ 4757638 (+)