RNA id: TCONS_00007779


Basic Information

Item Value
RNA id TCONS_00007779
length 2581
RNA type mRNA
GC content 0.37
exon number 11
gene id XLOC_004080
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17965098 ~ 17981427 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCGCAGATCGAGTTTCCAACAGGATTCCCCAGGTAAGATGCTCAAGGGGCGTTGATGTCATTGCGCGGAAGTGAGCAGGACCACAGTGCTGGGCACAGATAGCAGTGCCACTGAAGAAGACAATAGAGAAGGACAACCTGGGAGTCTCAACTGGAATTCACTACTGAGCTGGAGCATCAACGGGGTTCAGGATGTCACATCAGACGGGGATTCACGCAACTTCAGACTTAAGAGAGTTCCTCATAAAGGCCAGAAGAGGAGCTTTCAGAGCACTGAAGATTGTTATAAGGAGCGagcagCTGGTGTTGGGAGCATACAGAGAGGTTTCTCAGAGCTGGGATCAGGACTATGACGCATGTGTTTTGCCTATGCTGGATGGCCTGGAACCCTGTTATATCCTGTACCGGCTCGACTCACACAACCAGCTGGGATATGAGTGGCTGTTTATCTCCTGGTCACCAGACCAGTCTCCAGTGAGGTTAAAGATGGTTTATGCTGCCACTCGAGCCACACTGAAGAAAGAGTTTGGGGGAAGCCACATAAATGATGAAGTGTTTGGAACAGTCCAGGAAGACATCTCTTTTCAAGGTTATCTACGACACCTGTCTTCTTCCTCCTGCCCAGCTCCCCTCACCACTGCTGAGCAACAGCTTCATCAGATCAAAATCACAGAGGACAAAGTGGCACGGGACGAGCGAAGAATTGTTCGCCCTGTTGCCACTGTTAGTGGGCAAGGAAAGACAGAGATCAACGTGGAGAGTAAAAACCCGACTTTGCAGGGTTTAGCATTCCCATTGCAGGAGGAGGCTAAACATGCTTTACAGCAGTTTAAACACAAGCGCATCAATTACATTCAACTAAGGCTAGATACTGAACGAGAGACTATTGAACTGGTCCACACTAGTCCAACAGAGACCAAAGAGCTGCCAAGCAGAATCCCCACTGATGCCCCGCGATACCACTTCTTTCTCTACAAGCACGCACATCAAGGACAGCCTCTGGAAGCTGTAGTTTTCATCTACTCCATGCCTGGGTATAGCTGTAGCATTAAAGAAAGGATGCTCTACTCCAGCTGTAAGAATCGACTGCTGGATGAGGTCGAAAGAGACTATCACATAGAGATCGCCAAAAAGatgGAGATTGAAAGTGGAGACGGGCTGACGGAGGATTTTCTGTATGAAGAGGTATACCCGAAACACCATGCGCTGAGGCAAGCCTTCAGCAAGCCAAAAGGCCCAACAGGGAAACGAGGGAACAAGCGGCTCATCAGAGGAGCTGGAGAGAATGGAGATGAGAGCTAGACTCATAGGcctacagtaaaaacaaaacattttaaatgacatctaATACACGTTTCATTTCACCCTCATTTCTCTGTAGCCAGTTTCTTGCTTAAGCTGTACCTTTCCTTGTTATCATTTTTTATGTTTGACTTTGATAATCTCCTTTCACTCTGATACATATTCTGGCATGGTTTACAAGGCCACATAAAGGTGTTGTTTAGGTGATGATTTTTATGTAATAATTcccaataaaatacattaatctGTCTTATTAAATCTTTTCTTGTCttgttaaaagtaattttatcAGGGCGCTCAACCATTTAACAGAGCAcattttgacttaaaaaaaacgatgtttttgtgtgttatgtttaatgaagcaaaaaaagtttcacagtatttcatataatattttttatttcttcctttaaATTTTTTCTGCATATTTTTGAGAGTAAATATTAGGAAtttattgcactttaagctgaatatcttgcaaaataacttgtaaaatgttatgtaatgtcattatggctaaaaaaagaaaaaataataataattattataaactgattattattatgattaaaaatgcctttcctctgttaaacagcacaacaaataattatttttatgagAATTGAAAGTTTACATGAAGGCTAATTATTTTGCCtctaactgtatatatttcagttatattatatattaaagttGAATAAGTATCTAATGCAGGGATTTTTAAACTGggcttaaaataatattttcgaGTTTCTTACCATACATTATTTTCCAACTGAATTAAAtggtatatttaattattttattaaatcatcattttatttattttaattatgatttatctttatattgttttacagCTGTAAATGCTTATTCTCCAAACACTACATGGAACCAGAGCACTCCCaaacaaacagttttaaaacCCCTGATCTAATAACTGTAAAGctgaaaaacattacacaaaTCACACTGAATTCATAAAAAGTAGTACATTTGATCCACGTACATTTAAAGTTcagtaaaaacacaataaaaattgtcagacattaaaattattttgcaacacattaaaataatggtccattatagttaattttagtaaatgtatttactagcatAACCAAACAATTAGAAATACATTTATTACGGTATTAATTTatctagttaatattatttatgtaagTTAAATGTTAGTTTAAGTCAAttaacagtgcattaactaatgttaaaaagcaaaatgtggtttttattaatgtatatttaatgttgatc

Function

GO:

id name namespace
GO:0042989 sequestering of actin monomers biological_process
GO:0010976 positive regulation of neuron projection development biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0030837 negative regulation of actin filament polymerization biological_process
GO:0030042 actin filament depolymerization biological_process
GO:0010591 regulation of lamellipodium assembly biological_process
GO:0005884 actin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0003785 actin monomer binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-238 Predicted to enable actin filament binding activity and actin monomer binding activity. Predicted to be involved in actin filament depolymerization; negative regulation of actin filament polymerization; and regulation of plasma membrane bounded cell projection organization. Predicted to act upstream of or within negative regulation of actin filament polymerization. Predicted to be located in cytoskeleton. Predicted to be active in actin filament and myofibril. Is expressed in lateral line; otic placode; otic vesicle; and posterior lateral line system. Orthologous to human TWF2 (twinfilin actin binding protein 2).

Ensembl:

ensembl_id ENSDART00000104046

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007776 lncRNA downstream 162047 17796609 ~ 17803051 (-) True XLOC_004077
TCONS_00008462 lncRNA downstream 735245 17223850 ~ 17229853 (-) True XLOC_004073
TCONS_00007770 lncRNA downstream 817637 17144309 ~ 17147461 (-) True XLOC_004072
TCONS_00007769 lncRNA downstream 867168 17094233 ~ 17097930 (-) True XLOC_004071
TCONS_00007768 lncRNA downstream 868666 17094213 ~ 17096432 (-) False XLOC_004071
TCONS_00007784 lncRNA upstream 16626 17998053 ~ 18002279 (-) False XLOC_004081
TCONS_00007788 lncRNA upstream 162858 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007789 lncRNA upstream 165232 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00008463 lncRNA upstream 565588 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00008464 lncRNA upstream 570403 18551830 ~ 18556014 (-) True XLOC_004088
TCONS_00007778 mRNA downstream 573 17959507 ~ 17964525 (-) True XLOC_004079
TCONS_00007775 mRNA downstream 161961 17793376 ~ 17803137 (-) False XLOC_004077
TCONS_00007774 mRNA downstream 162027 17785182 ~ 17803071 (-) False XLOC_004077
TCONS_00007773 mRNA downstream 182168 17757342 ~ 17782930 (-) True XLOC_004076
TCONS_00007772 mRNA downstream 209654 17726649 ~ 17755444 (-) True XLOC_004075
TCONS_00007782 mRNA upstream 15976 17997403 ~ 18017918 (-) False XLOC_004081
TCONS_00007783 mRNA upstream 16063 17997490 ~ 18107447 (-) False XLOC_004081
TCONS_00007785 mRNA upstream 16759 17998186 ~ 18015534 (-) False XLOC_004081
TCONS_00007786 mRNA upstream 29356 18010783 ~ 18020258 (-) False XLOC_004081
TCONS_00007787 mRNA upstream 33920 18015347 ~ 18017287 (-) True XLOC_004081
TCONS_00007777 other downstream 56416 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 1320585 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 1628212 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 1837420 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 1906791 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007803 other upstream 610572 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 1199025 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 1434751 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 3598499 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 3771048 21752475 ~ 21752589 (-) True XLOC_004115

Expression Profile

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