RNA id: TCONS_00007778


Basic Information

Item Value
RNA id TCONS_00007778
length 1341
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_004079
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17959507 ~ 17964525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACGTGCGACCGAGGCGTTTCTCAGCGCTTTTATTTCAGGAAAATAATAACACACCAAGCCAAACGACCTATTGCTCTCGTTAGACTACTACAGCTGCGAagcttttttgtgttgttttgcgtCAGAGTTTGGCCCTCGCGACTCCCTCGAGAATATCCGACTCTTTCAGTTTTTAGGGATTGTTCTTGTTTCCAatatacactgttgaagtctTCACGATTTGTGGACGGGTTTGTCCTCATTATAGTCTTGCTGGAACAATCATGTCAGCAGTTTTGGCTCACGACAGGACTTGTATTCGCGTTGATTTTACAGTGTGTCAAATTTCTAACTGTCACCTCACATTCTGCTGTCCATTGGTGACGTACAGGAGGTGACGATTTTAATGCCCACAAAGAGGAACCAGTCAGGAATGGTTACAAGGGGTACAGGTTCTCAAAATGAGAGGGGTGAATCTGAAGTTCAACAAACCCAGCAGCACCAAGCAGCTCCATACTCTGAGGACTTTCACTTCATCACCACCACCTTCCAGCACCTGAACACCTCAGGATGGTACTGGGGTGGTTTGACAGCTGGCGATGCGAGGGCTGCCCTAATCGGAGCACCTGAAGGTACTTTCCTCGTGCGGGACAGCAGTCATCCGCTTTACCTCTTTACCCTCTCTGTACAGACCTGGAGAGGCCCTACTAACATCCGCATAGAGTACGACAGCGGCCGATTCCGTCTGGATTCCAGTTTTCCAGCTCGGTCCTGCCTGCTGTCCTTTTCTGCTCTTCCTAGTCTCGTGCACCACTATTCATCCGCACGTCCCGAAGAGGAGAAAAAAGCAGAGGACCACCATCATATGGTGGCAAAGGACACTGGGATACTACTGAAGCTCAGAAAGCCTCTTCACAGGCCTCAAGCCTTTCCCACATTACAGCACCTCACTCGACTCACTATAAACAGACACACTGACTGCCATACAAAACTGCCTCTGCCACGACCACTGCTGCTTTACTTGCAGGAGTATCCCTTTCAGGTGTGAAGATACTCACTAAGAGGACATTTTGAGCAATTTGAgggttatttttgtatttttttgaaagatttactTACCATCAAGTTGCAAAAATTGCAGCAGGATTATGAGTCTTACTATTGCCATAAGATAAGATGTATTCCTGATTGCATTTGCACAAATAAACAAGGACTAATTTATGcagattcaaaaaaaaaaaaaaaaaatgtttgtacatatttttgtttttttacctttttttgtcAAGCAGAGGGTTTCTTTCTGTGCTTCGTGGAGCTCTGCATACACAATActataacactgaaaaaaataaataaa

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process
GO:0005942 phosphatidylinositol 3-kinase complex cellular_component
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080204-120 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of signal transduction; and regulation of growth. Predicted to be part of phosphatidylinositol 3-kinase complex. Human ortholog(s) of this gene implicated in malaria and tuberculosis. Orthologous to human CISH (cytokine inducible SH2 containing protein).

Ensembl:

ensembl_id ENSDART00000018948

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007776 lncRNA downstream 156456 17796609 ~ 17803051 (-) True XLOC_004077
TCONS_00008462 lncRNA downstream 729654 17223850 ~ 17229853 (-) True XLOC_004073
TCONS_00007770 lncRNA downstream 812046 17144309 ~ 17147461 (-) True XLOC_004072
TCONS_00007769 lncRNA downstream 861577 17094233 ~ 17097930 (-) True XLOC_004071
TCONS_00007768 lncRNA downstream 863075 17094213 ~ 17096432 (-) False XLOC_004071
TCONS_00007781 lncRNA upstream 9666 17974191 ~ 17977065 (-) True XLOC_004080
TCONS_00007784 lncRNA upstream 33528 17998053 ~ 18002279 (-) False XLOC_004081
TCONS_00007788 lncRNA upstream 179760 18144285 ~ 18146955 (-) False XLOC_004082
TCONS_00007789 lncRNA upstream 182134 18146659 ~ 18148488 (-) True XLOC_004082
TCONS_00008463 lncRNA upstream 582490 18547015 ~ 18549884 (-) False XLOC_004088
TCONS_00007775 mRNA downstream 156370 17793376 ~ 17803137 (-) False XLOC_004077
TCONS_00007774 mRNA downstream 156436 17785182 ~ 17803071 (-) False XLOC_004077
TCONS_00007773 mRNA downstream 176577 17757342 ~ 17782930 (-) True XLOC_004076
TCONS_00007772 mRNA downstream 204063 17726649 ~ 17755444 (-) True XLOC_004075
TCONS_00007771 mRNA downstream 245520 17596979 ~ 17713987 (-) True XLOC_004074
TCONS_00007779 mRNA upstream 573 17965098 ~ 17981427 (-) False XLOC_004080
TCONS_00007780 mRNA upstream 1593 17966118 ~ 17981421 (-) False XLOC_004080
TCONS_00007782 mRNA upstream 32878 17997403 ~ 18017918 (-) False XLOC_004081
TCONS_00007783 mRNA upstream 32965 17997490 ~ 18107447 (-) False XLOC_004081
TCONS_00007785 mRNA upstream 33661 17998186 ~ 18015534 (-) False XLOC_004081
TCONS_00007777 other downstream 50825 17906902 ~ 17908682 (-) True XLOC_004078
TCONS_00007763 other downstream 1314994 16644397 ~ 16644513 (-) True XLOC_004067
TCONS_00007758 other downstream 1622621 16332824 ~ 16336886 (-) False XLOC_004066
TCONS_00007751 other downstream 1831829 16127382 ~ 16127678 (-) True XLOC_004063
TCONS_00007745 other downstream 1901200 16058191 ~ 16058307 (-) True XLOC_004059
TCONS_00007803 other upstream 627474 18591999 ~ 18604435 (-) True XLOC_004089
TCONS_00007814 other upstream 1215927 19180452 ~ 19180555 (-) True XLOC_004095
TCONS_00007815 other upstream 1451653 19416178 ~ 19416315 (-) True XLOC_004096
TCONS_00007850 other upstream 3615401 21579926 ~ 21585161 (-) True XLOC_004113
TCONS_00007852 other upstream 3787950 21752475 ~ 21752589 (-) True XLOC_004115

Expression Profile

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