RNA id: AMCG00002451


Basic Information

Item Value
RNA id AMCG00002451
length 3578
RNA type mRNA
GC content 0.46
exon number 24
gene id AMCG00002451
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 14878149 ~ 14911316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGAGGCGCGACTCGCAGCGAAACGGGCGGCGCGAGCAGAAGCCAGGGACATTCGCATGAAAGAACTGGAGCGGCAGCAGAAAGAGGAAGACACAGAAAAAGCCAAGTATGGTTACAAGTCCAGTGGGCGGCATCACCGGGGAGCTGATGATGATGTGAAGTCAGTCCGCAGTGTTGGCAGTTACAGGCCATCCTCCTCCTCGACCTCTCTGTCCTCCTCCCTGCGAGATGTGGGGGGGACTCACAAAAGCCGAGCGAGCACCACCCGGAGAAGAGACCTTGTGAGCTCTGCTTACAGTGACTCTTATGGACTCAAGAAGACTCCTGTGTCTAGCACCTCCAGGAAGGACCTGTTGGCTGGATTTTACCATGACCAAAGAAACTACAGCAGCCTTAAGTACTCCAAACCTCTCCCTTCCTACCACACTCGGTCCTCTTCTCTTTACAATGACCCTCTACCAACTTCCAGGAGCTACAGGGCCTCCCCAACCACGGGCACGGGTCTGACACGCAGCTACAGCCTGGCGTCTTTATACGATGAGGGTCGCTATGGGTCTTACAGTCCGAGAGCTCCCTCAGAATACAGCGGTTACTCATCAAGAGCGAGTTCGACTCGCAGCAGTCCAGTGTCCTCGGATGATGACACAGCGAGCACTGTGTCCCAGGATCGCATCAGTGGTCGGGGGCGACGCGATAGCGTGTCCTCTGACTTCTCTGATAACAGCGAGTCAGCTGCGGATTATTTTAGCCGCTCCAACCGCAGGGGCAGCATCGTGTCTGACATGGATGATCTTAGCATCCCAGACCTGGACAGCCTGGATGAAAAATGCGACAAACAGTTCAGCGAAACGTTTTCTCGGCCGTCATCCCGCAGTACTACACCAGGCCTGTCTCCTGCTACACTGGCCTCGCTGGGCGGGACCTCATCACGGAGAGGCAGTGGCGATACGGGCAGTATAGTCGACCCAGACTCTTCTCTCAGTGAATTACGGGAGTCGTTGACGGAAGTGGAGGAGAAGTATAAGAAAGCCATGGTCTCCAATGCACAGCTGGACAACGAAAAAGGAAACCTCATCTACCAGGTGGACACGCTCAAGGATGTCATTGAGGAGATGGAGGAGCAGATGGCGGAAATGCACAGAGAAATGGACGACAAAACTAAGgaatTAGAAAGACAAAAGCACATGTGTATCGTCCTACAGCACAAACATGATGAATTGAAAGAGGGAATCCGCCAAAGAGATGAACTTATTGAGGAGAACCAGCGAATGCAGCAACAGTTAGATTCACTCACCAGGGAAGTGTTTGATCTGCAGGAAACGGTTAACTGGAAGGACAAAAAGATTGGGGCTCTAGAGAGGCAGAAAGAGTACTTTGACTGCATTAGGAATGAGAGAGATGAGCTCAGAGATGAGTTGGCTGACCTCAAAGGAAAAGCGAAGACAGGAGAGAAACATGGGCTGGTGATCATCCCAGAAGGCACTCCGAACGGGGACATCAACCATGAGCCCCTTGTCGGTGCAATAACTGTGGTGACGCAGGAGGCTGCTCAGGTGCTAGAATCTGCTGGAGAGGGGCCGCTAGaTGTGAGGCTAAGGAAGCTTGCTGATGAAAAGGACGAACTCTTAGCTCAGATCAGGAAGCTGAAGACCCAGCTGGAGGACGAGAGGCAAAAGAGCTCCAAGATGGAGAGTGTGTTCACGGACGGAGAGCGGGTGGAGAATGGCACCGACCTGCAGTTCATTGAGATGCAGCGAGATGCCAACAGGCAGATAAGTGAATACAAGTTCAAACTATCCAAGGCCGAACAGGAAATGGGTACCATGGAACAAAATaTTAACAGACTTGAAGGACAGGTGTCCCGATACAAAGCAGCGTCGGAGAACTCTGAAAAGGTTGAGGACGAACTAAAAGTGGAGAAAAGGAAACTTCAAAGAGAGCTGCGAACTGCTTTGGACAAGATCGAGGAGATGGAAATGACCAACAGCCACTTAGTCAAGCGCTTAGAGAAGATGAAGGCCAATCGCAACGCTTTTCTGTCTCAGCagtgagaggaggaggagagagcagcCGCCACCAAGAGAAACCAAGACGCACTGCAACTTAAATGAACAAGCCCTTAACTTTTGTTCCATAAATCATACGAACTTTTGCTGACAGCACAAACTATTTGGAGCACCTCGGGGTCCTTCAAGAGTCCTATTCTAGTTTTATAGCGACATACTGGCatcctttttttgttgtaatttataAGAATGAAAGCAATCGCTCAGAGACTGTTAATTGTGACCTTTTTTTCTCGTTTAGCAGCATTGTTCTgtagtggggggaggggggattttCTTTGAGTGGCTGGTGCAGATGAAATGAGTTAATTTCTTTCAGTGCTTTACACATTACGTTATTCGCAaacgtttttctttctttcctgctgCTTGGATGAGGCTGGGTGCttgaatttagttttgttttttcatttgatgaCTTGCATGAATTCAACAGGACACTATACTGCTTGTTAACTGTAACAGATAAATGGCTGCTCTTGCTCTGCACCCATCCATAACGCAAGACAGCTAAAGTGCCTTTTACACGGTGCAAAGGAGATTAAAGAGGTTTGATAACTGCATTTGGTATACACAATAATACTGGTAcaaaatgatgtatttaaaatagggtgcagttctgaaaaaatagaaaaacacattgtgataCGTTTTCATTGTTAAGGAaattttcaaaaaggaaaatatttaattttttttcttggaaaaaaaaaatatgtaaatgattaTGAACTGTATATAAATTGTGGATGTTTTTGCATGGGTGATGGCACATCGGATAGTTTCGGACTGAAGCCAGGATATTAGTCTTGGCTCTGTTCGATTTAGGTATGTGACAAttgcataaaaagaaaagaaaacagtacatgctgtactttttaaaactgtattcttTACTGCTTGGAAGGAAAGCAGATTCAGTCTCAGGACCACAAATTGATTGTGACTGGGGCAgctaaaacattaaaaggacACTTTataaacagatattttttttggtttgttttacatttttctcattgCTCCTGGCCATGCTCACCAATTCAGTCCCATACAGAAGATCAACAGGTAACTTAAGaacgagaggaggacattccccccatcttgctcgtttggtgtccattaataactgagtgatccagtctgtttttgaatgttcccaaattgtttcttcaaccacatcgctggggagttttttccagattgtaatgactgtgtgaaaaagtgtctcctgtaaCATATAATACAGACCCAGGGCTAGATCTCGTTTTAACAATGTAAGTAATGATCTTCACTGTCAATTACCCATTTCATTGAGAGAAACAAGACCTAAGGGGGGCTCTGTAACTTGTAAATGTTGTCACCTCAAATGCAAGGTGAGCGATGAATGTGTCAGTTTTGAATATCAAgtaaaagtgattttaaaataatcttctgCTTTGCTGCTCTAAATTTTAAAGAATGATGTGTAATAATATTCTGTAATAAAACTGCTGCACATGATATTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154466 lncRNA upstream 185373 14691981 ~ 14692776 (+) True G123197
TU154429 lncRNA upstream 508236 14369093 ~ 14369913 (+) True G123171
TU154427 lncRNA upstream 511814 14365036 ~ 14366335 (+) True G123169
TU154415 lncRNA upstream 516613 14353397 ~ 14361536 (+) False AMCG00002437
TU154277 lncRNA upstream 1287468 13572519 ~ 13590681 (+) True G123043
TU154580 lncRNA downstream 351633 15262949 ~ 15340169 (+) False G123295
TU154579 lncRNA downstream 426272 15337588 ~ 15340169 (+) True G123295
TU154711 lncRNA downstream 778285 15689601 ~ 15689963 (+) True G123386
TU154713 lncRNA downstream 883092 15794408 ~ 15795149 (+) True G123388
TU154813 lncRNA downstream 1574510 16485826 ~ 16489952 (+) True G123468
AMCG00002443 mRNA upstream 191179 14686068 ~ 14686970 (+) True AMCG00002443
AMCG00002441 mRNA upstream 211925 14655853 ~ 14666224 (+) True AMCG00002441
AMCG00002444 mRNA upstream 236199 14638876 ~ 14641950 (+) True AMCG00002444
AMCG00002442 mRNA upstream 264056 14605664 ~ 14614093 (+) True AMCG00002442
AMCG00002439 mRNA upstream 301165 14566399 ~ 14576984 (+) True AMCG00002439
AMCG00002450 mRNA downstream 11106 14922422 ~ 14946523 (+) True AMCG00002450
AMCG00002449 mRNA downstream 39722 14951038 ~ 14962371 (+) True AMCG00002449
AMCG00002456 mRNA downstream 461690 15373006 ~ 15378676 (+) True AMCG00002456
AMCG00002457 mRNA downstream 477900 15389216 ~ 15405384 (+) True AMCG00002457
AMCG00002458 mRNA downstream 523594 15434910 ~ 15483656 (+) True AMCG00002458
TU154081 other upstream 1748452 13125378 ~ 13129697 (+) True AMCG00002393
TU154058 other upstream 1816464 13058073 ~ 13061685 (+) False AMCG00002388
TU153909 other upstream 2737684 12133786 ~ 12140465 (+) True G122746
TU153704 other upstream 3041980 11835439 ~ 11836169 (+) True G122582
TU153608 other upstream 3183984 11688600 ~ 11694165 (+) True AMCG00002331
TU154987 other downstream 2046845 16958161 ~ 16960082 (+) True AMCG00002500
TU155222 other downstream 3004120 17915436 ~ 17984730 (+) True G123807
TU155458 other downstream 3920698 18832014 ~ 18838531 (+) True G123989
TU155541 other downstream 4219087 19130403 ~ 19132358 (+) False AMCG00002561
TU155679 other downstream 5362773 20274089 ~ 20276255 (+) True AMCG00002573

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013220 False 1006 nonsense_mediated_decay 0.49 10 NC_007124.7 42625772 ~ 42672791 (-)
grasscarp (Ctenopharyngodon idella) CI01180000_07664300_07675535.mRNA True 2090 mRNA 0.47 18 CI01180000 7663854 ~ 7675535 (-)
rainbow trout (Oncorhynchus mykiss) LOC110502258 True 2342 mRNA 0.42 9 NC_048587.1 10457313 ~ 10470536 (-)