RNA id: TCONS_00003091


Basic Information

Item Value
RNA id TCONS_00003091
length 845
lncRNA type antisense_over
GC content 0.34
exon number 4
gene id XLOC_000442
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 38171857 ~ 38324035 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGAGCTGGGGATTTAAAATAATGAGCGATTTCCATGGCTCCAGTAAACTTGAAGGCTTGCACCTCgaccaaaacagaaaaaataaacatcgCAGATGCAATAGAACAGAATAAGCGGTGGGAGCTACACTGTCCATTGCAGTTCCGGGCAGGCATCAGAAATGCCTTCATCATCCATGCAGCAGATCGTCATCCATGGTGCTGACTTGACTCCTTGGCTCTTCTTGAGTTCTCAGATGATACAAAACATCATTAATTGTACCAACATACGAAAAGGGGATTCTGTCAAGCACACAGCATTGTATGCTCGGGAAATCCACGAAGAGCAGATGTACAGCGCCATTAGCAGACAGCCATCTGACCTCAAAACATTTTAAACGTGCACttagacaaaaacaaacagaaatttttTGTGCATTTAGGATAAAGATATACCATTCATTGTtcattaatatttgtaatttgaGTATATTGTCATTTAATGTAATCTTTTccgtattgtttgtttttaaagcttaaattatcaaaactattatttgGCTTACTGCATGTCTGTAGACCCAGAGTGTTAAAAACTTTGCTCATTTCTATAGATTTCTATAaatataaacacagttatttttttattttataaaatcaaataaaatggatTGTAGTGGAATGTTGGTTCAGTTATATGGAATTTGTCATGgataatattttatgtttttttggcaTAGTATTCACTATAATCTGCATTTTAATCTTTGTGGTTTTCTTTAGACCATAGTTAGGCAGTCATTCAGTCATACTTTTAAGACCTGTCAGTTCATATAAAACaatcattttttattgtattaccaAA

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000772 lncRNA upstream 17298 38146408 ~ 38154559 (+) False XLOC_000441
TCONS_00003090 lncRNA upstream 337465 37833347 ~ 37834392 (+) True XLOC_000439
TCONS_00002857 lncRNA upstream 533490 37591258 ~ 37638367 (+) True XLOC_000436
TCONS_00000764 lncRNA upstream 754226 37404990 ~ 37417631 (+) True XLOC_000435
TCONS_00000758 lncRNA upstream 879676 37284575 ~ 37292181 (+) True XLOC_000433
TCONS_00003094 lncRNA downstream 65069 38343320 ~ 38346108 (+) True XLOC_000444
TCONS_00003095 lncRNA downstream 571378 38849629 ~ 39021860 (+) False XLOC_000449
TCONS_00000788 lncRNA downstream 650385 38928636 ~ 38995761 (+) False XLOC_000449
TCONS_00000789 lncRNA downstream 650385 38928636 ~ 39021700 (+) False XLOC_000449
TCONS_00000790 lncRNA downstream 650385 38928636 ~ 39022832 (+) False XLOC_000449
TCONS_00000770 mRNA upstream 951 38142354 ~ 38170906 (+) False XLOC_000441
TCONS_00000773 mRNA upstream 1282 38151262 ~ 38170575 (+) False XLOC_000441
TCONS_00000771 mRNA upstream 5043 38142715 ~ 38166814 (+) False XLOC_000441
TCONS_00000774 mRNA upstream 9281 38153944 ~ 38162576 (+) True XLOC_000441
TCONS_00000767 mRNA upstream 39245 37752171 ~ 38132612 (+) False XLOC_000438
TCONS_00000778 mRNA downstream 84161 38362412 ~ 38374799 (+) True XLOC_000445
TCONS_00000780 mRNA downstream 480010 38758261 ~ 38802422 (+) False XLOC_000447
TCONS_00000781 mRNA downstream 480194 38758445 ~ 38802648 (+) False XLOC_000447
TCONS_00000782 mRNA downstream 496790 38775041 ~ 38802422 (+) False XLOC_000447
TCONS_00000783 mRNA downstream 498043 38776294 ~ 38803495 (+) True XLOC_000447
TCONS_00000769 other upstream 175280 37996459 ~ 37996577 (+) True XLOC_000440
TCONS_00000744 other upstream 1048085 37123642 ~ 37123772 (+) True XLOC_000432
TCONS_00000740 other upstream 1425288 36728297 ~ 36746569 (+) True XLOC_000429
TCONS_00000735 other upstream 1480958 36665543 ~ 36690899 (+) False XLOC_000428
TCONS_00000728 other upstream 2017480 36154261 ~ 36154377 (+) True XLOC_000425
TCONS_00000777 other downstream 84097 38362348 ~ 38374799 (+) False XLOC_000445
TCONS_00000779 other downstream 387503 38665754 ~ 38753029 (+) True XLOC_000446
TCONS_00000785 other downstream 540061 38818312 ~ 38822163 (+) False XLOC_000448
TCONS_00000786 other downstream 541326 38819577 ~ 38822163 (+) True XLOC_000448
TCONS_00000794 other downstream 1235490 39513741 ~ 39513857 (+) True XLOC_000454

Expression Profile

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