RNA id: AMCG00010091


Basic Information

Item Value
RNA id AMCG00010091
length 2736
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00010091
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 13643088 ~ 13675666 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAGTGGCTGAAAAATGAAGAGATAATTGACCCTTCTGATGACCGTAATTTCTACATCACCATCGACCACAACCTGATCATTAAGCAGGCCCGGCTATCGGATACGGCCAACTACACCTGTGTTGCCAAGAACATTGTTGCAAAGAGGAGGAGCACTACAGCCACGGTCATAGTCTATGTGAATGGAGGTTGGTCAACGTGGACTGAGTGGTCAGTTTGTAACAGCCGCTGTGGCCGAGGGTTTCAGAAGCGCACCCGTAGCTGCACCAACCCGGCCCCGCTTAACGGAGGAGCTTTCTGTGAGGGACAGGGTGTCCAGAAGCTCGCCTGCACCACAATGTGTCCAGTGGACGGGGCCTGGACAGAATGGAGCAAGTGGTCCACATGTGGGACAGAGTGCGCCCACTGGAGAAAGCGGGAGTGCAACTTGCCGGCGCCAAAAAACGGGGGCAAGGACTGCGAGGGCATGGTGCTGCAGTCTCAGAACTGCACAGATGGTTTGTGCATGCAGACTGCTCCAAGTACAGATGATGTTGCCCTCTATGTTGGCATTGTGATAGCTGTGATCATGTGCCTGGTGATTTCGGTGATCGTGGCACTCTTTGTGTACCGCAAGAACCACCGCGACTTCGACTCGGACATCATCGACTCTTCAGCTTTGAACGGCGGCTTCCAACCAGTCAATATCAAGACTGCTAGAACAGCTGACCTACTGACCGCCCCTCCTGACCTCACATCTGCGGCCGCTATGTACCGGGGCCCCGTCTACGCCCTGCACGACGTCTCAGACAAGATCCCCATGACCAACTCCCCTCTGCTTGACCCTCTGCCCAACCTGAAGATTAAGGTGTACAACTCTTCTGGCTTGGTCACTCCCCAGGAAGACCTCTCAGACTTCACCTCCAAGCTCTCTCCCAAGATCACCCACTCCCTGCTGGACAACGAGACCATGAACCTGCGAAACCAAAGCCTGGCCCGCCAGCGCGACCCGTCCTGCACGGCTTTCGGCTCTTTCAACTCCTTAGGAGGTCATCTCATCATCCCCAATTCAGgGGTAAGCTTGTTGGTGCCAGCAGGAGCAATTCCCCAGGGACGAGTTTATGAGATGTATGTGACAGTTCATAGAAAAGACAACATGAGGCCACCTGTGGAGGACATTCAGACAGTGCTGAGCCCTGTGGTGAGCTGCGGGCCCCCAGGAGCCCTGCTGACCAGACCTGTCATCATCACCATGCACCACTGTGCGGAGGCCAACACTGACGACTGGCAGATCCAGCTGAAGAACCAATCGCAGCAAGGGCAGTGGGAGGATGTTGTGGTCGTCGGAGAGGAAAATTTCACCACCCCCTGTTACATCCAAATGGACCTGGAAGCATGTCACATCCTGACAGAAACTCTCGGCACCTACTGCTTGGTTGGACAGTCCATCAGCAAAGCAGCTGCCAAACGACTAAAGCTGGCCATCTTTGGCCCCGTCACCTGCTCCGCGCTGGAATACCACATTCGGGTCTACTGTCTGGATGACACGCAGGATGCGCTCAAGGAGGTTCTGCAGATGGAGAAGCAGATGGGAGGAAAGCTATTGGACGAACCAAAGACTCTACACTTCAAGGACAGCACCCACAACCTCCGGCTGTCCATTCACGACATCCCACACTCCCTCTGGAAGAGCAAGCTGCTGGCCAAGTATCAGATCTGGAGTGGATCCCAGCGAAATCTGCACTGCACGTTCACCCTGGAGAGATTCACTCTGTCCACCACGGATCTGACCTGCAAACTGTGCGTCCGACAGGTAGAGGGTGAGGGGCAGATATTCCAGCTGAACAGCGCCTTGTCAGAGGACACCCAGAACATCGACACATCCTTAATGGACCCGGCCAGCAACATAACTACTCTTGTGGGACCAAACGCTTTCCGGATCCCCCTTTCGATTCGTCAGAAGCTGTGCGGAAGCCTGGACGCCCCTCAGACCAGAGGCAATGACTGGAGGATGCTGGCCCACAAGCTGAATTTGGACAGGTATCTAAACTACTTTGCCACAAAGTCAAGTCCAACCGGAGTCATACTGGATCTATGGGAAGCGCAGCACTTTCCTGATGGGAACTTGAGCCGGCTGGCGGCCGTCTTGGAGGAAATGGGCCGGCATGAGACGGTGGTTTCCTTGGTAACAGAACACTGACAGCGGTTGGGAAAGTTTGTACGCGAGAACCATGATGCGCTACAAGAAATACAGAAGCTACAAACTCATGGATCCCAACCAATGAtttttgttacaaaaacaaaaaagtctgaaaaatgtaaaggatTTTGAGTTTTACAGAAAGACCTTGTATATGATCTCATGAAATCAGAATCATGTGAAAGCATCGATTCATtgctaaaaactgaaaatactcTAGCCTGGGCTGTACATTCCTtggtacagttttttttttcttcttctttatacAGTTTCCTAGGAAACGCTTTATTCTGCTATCCATATATGTGGATGAACTTTCCTAATCCAGATTTCTAGTGTGTGTATGAGATTCTGTGTGGAGGGGTGTGAAGTAACAGAACCTGAGGTACAATCCGATGCCCCCCTTCTCTGCTCTGAATTAGATGGATTACCAAATATGGCATTTAAAATCATCTGCACATTATCCACCTGTTTCCTGTATTTTAGGTCTTCATTTGTAGCCTCCCCATACCTTGCATTTATGTCTTTTGGGTTTTAAATAATGATCACATT

Function

GO: NA

KEGG:

id description
K07521 UNC5; netrin receptor unc-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97071 lncRNA downstream 293896 13347541 ~ 13349192 (-) False AMCG00010082
TU97036 lncRNA downstream 921479 12718883 ~ 12721609 (-) True G77760
TU97034 lncRNA downstream 1099448 12543435 ~ 12543640 (-) True G77758
TU97031 lncRNA downstream 1129167 12462963 ~ 12513921 (-) True G77755
TU97013 lncRNA downstream 1184969 12432913 ~ 12458119 (-) True G77738
TU97148 lncRNA upstream 495645 14171311 ~ 14171582 (-) True G77852
TU97181 lncRNA upstream 731952 14407618 ~ 14407820 (-) True G77878
TU97190 lncRNA upstream 765950 14441616 ~ 14442261 (-) False G77887
TU97191 lncRNA upstream 769685 14445351 ~ 14446141 (-) True G77887
TU97208 lncRNA upstream 829772 14505438 ~ 14511946 (-) True G77896
AMCG00010088 mRNA downstream 7688 13578716 ~ 13635400 (-) True AMCG00010088
AMCG00010082 mRNA downstream 172833 13347713 ~ 13470255 (-) True AMCG00010082
AMCG00010076 mRNA downstream 1174406 12465333 ~ 12468682 (-) True AMCG00010076
AMCG00010069 mRNA downstream 1297744 12339260 ~ 12345344 (-) True AMCG00010069
AMCG00010070 mRNA downstream 1362197 12208986 ~ 12280891 (-) True AMCG00010070
AMCG00010090 mRNA upstream 27731 13703397 ~ 13712371 (-) True AMCG00010090
AMCG00010092 mRNA upstream 585073 14260739 ~ 14279927 (-) True AMCG00010092
AMCG00010097 mRNA upstream 864237 14539903 ~ 14546114 (-) True AMCG00010097
AMCG00010100 mRNA upstream 1133340 14809006 ~ 14829310 (-) True AMCG00010100
AMCG00010104 mRNA upstream 1212798 14888464 ~ 14896353 (-) True AMCG00010104
TU96773 other downstream 1913923 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 6580267 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 6706020 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 6974254 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 7742104 5894675 ~ 5900984 (-) True G76463
TU98065 other upstream 4165326 17840992 ~ 17844389 (-) False AMCG00010188
TU98067 other upstream 4177201 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 4269569 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 7255505 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 7400275 21075941 ~ 21081825 (-) False AMCG00010247

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003591 True 2241 mRNA 0.58 12 NC_007121.7 1052591 ~ 1107558 (+)
grasscarp (Ctenopharyngodon idella) TU444861 True 1702 lncRNA 0.53 7 CI01000203 677074 ~ 828020 (-)