RNA id: TU129062


Basic Information

Item Value
RNA id TU129062
length 1300
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G103316
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5353769 ~ 5355664 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTACTCaacaaaaatagatatatacaaTTTGATTTTGACCTAGATGCATTATAGCTTAACTGTATTATtcggttaaaaaacaaacactggaaataATCATTTTTCCTCACAAAAACCTTGGACAGGCCAATGGATCAGAAGCAATTTTGGGGGAGGGGTAACAGACAACCTGTGCGTTGACTTTGAAAGGGTTTGATTGAAATGTGTGGTAAAAACTAGCTCACTCTTTTAtagatgtacatttataaaagaaacacaagaagTAGTAAAATCAGCTTTTTCAGTCCACGTTAGGGCTTTGGTAAGTCTAAGTGTCTGGTGTCCAGAGGTTGAATGGTTGTGTGGAGATGGGGTTAATCTTGCGTCAAGAGCCCTTTTTCTCTCCAGTTCGtcacccccaccctcctcctcttGTTGCCTGGAGTGAAGTGGAGCCATGTGTTTCCCCGCACCTGCACACTTCTGTTAGGAAGTGACGGCGCCGCTGTGGGGCTAGTGGCACAGCCCCCTGCTATCTTCACAAGCGAAGTCCGATGCCTggaataaaacagaatatttttttaagcaagctttaaaatattcaaaatcagTTCTACTAAAATGTCCTGCACGCATTTGAGATGCATCATCGGCGCCTGCTTTTTAATAagatgcaatacatttttaccTTTATGCGAGTGTAATATATGGAGGAATGAATGTCACTTAAAATCTTCATTTACTGCGACAATGGCAGTCGTTGCAAATACGCACGTTGACCGCTTCTAGCACAAAAGCAATGCATGGCTCATCACAGTACAACCCACTCGGCTGAATCACACGAACACGAGAATgcaatgaatgaatgcatgcatgcacacacgcacacacatgcacacagggCTGCATGCTCACCTTCAGTGACAGCACGACTTCTGGCGTTTTCTCCGACGACTCGTTTTCCAGCGCGATCTGCAGGTCGAAGATATAATCGATGACGTGCTGCAGGATCTCCACCTGGCTGACGGATTTGTCCTGCGGGATGCTGGGCACCAGCTCCTTCAGTTTGGAATAGCAGTCATTCATGTCGTACAGCACGGTCATGGGCTCATCCGTCATCGGGGGTTTATTCCGGGAGATGGCGAGACTCTGTTCCGATATGCAGCACACGGCTTCGTAGCAACTCCTTACAGATCGCACAGGACTGATAGCCTTCATAGTTTATTCCGTTTCGGAGATTACGGTCTGTCCCTCTCACAAGATCAACTCTGAATGCAAAGCCGCTGGATGCTCGTTTTTATACCACGCCCTCCAAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128991 lncRNA upstream 213048 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA upstream 213048 5134227 ~ 5140721 (+) False G103258
TU128860 lncRNA upstream 734113 4592744 ~ 4619656 (+) False G103152
TU128857 lncRNA upstream 756810 4592744 ~ 4596959 (+) True G103152
TU128863 lncRNA upstream 759121 4536337 ~ 4594648 (+) False G103152
TU129094 lncRNA downstream 100694 5456358 ~ 5460573 (+) True G103333
TU129117 lncRNA downstream 194394 5550058 ~ 5613434 (+) True G103348
TU129124 lncRNA downstream 261394 5617058 ~ 5652821 (+) True G103354
TU129125 lncRNA downstream 268094 5623758 ~ 5645621 (+) False G103354
TU129132 lncRNA downstream 313461 5669125 ~ 5694122 (+) True G103360
AMCG00010942 mRNA upstream 69471 5283816 ~ 5284298 (+) True AMCG00010942
AMCG00010943 mRNA upstream 79637 5255095 ~ 5274132 (+) True AMCG00010943
AMCG00010935 mRNA upstream 184162 5166594 ~ 5169607 (+) True AMCG00010935
AMCG00010936 mRNA upstream 193325 5160010 ~ 5160444 (+) True AMCG00010936
AMCG00010941 mRNA upstream 197574 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010951 mRNA downstream 148713 5504377 ~ 5511682 (+) True AMCG00010951
AMCG00010956 mRNA downstream 238269 5593933 ~ 5599868 (+) True AMCG00010956
AMCG00010957 mRNA downstream 244255 5599919 ~ 5601213 (+) True AMCG00010957
AMCG00010962 mRNA downstream 578434 5934098 ~ 5939360 (+) True AMCG00010962
AMCG00010963 mRNA downstream 594762 5950426 ~ 5959972 (+) True AMCG00010963
TU128904 other upstream 711411 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 1270183 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 1773492 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 1910235 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 1925340 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 1286319 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 1562102 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 3192699 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 4174810 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 5463024 10818688 ~ 10819423 (+) True G104273

Expression Profile