RNA id: TU47212



Basic Information


Item Value
RNA id TU47212
length 222
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G37820
representative True

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 48637343 ~ 48638164 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCATCTGCCTCAAAGTTCACTGAACAGATTCATGATCTCACGGATCACATTCGTAAAGAAGTTACTAAAATCCACCAGACCTCGAAGTGGTCTCTGGAGAGCTGGATAAGTGGCTCCCTAGGAAGAATTGGTGCTATTATAGCCCAGAGTCTGCTTTTTATCCTTGGCATACTCATTCTtctctatatttgttttgtactgatcAAGTGTTGCTGTGCTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU47171 lncRNA upstream 61692 48522875 ~ 48575651 (+) False G37784
TU47168 lncRNA upstream 88162 48543625 ~ 48549181 (+) True G37783
TU47169 lncRNA upstream 113428 48522875 ~ 48523915 (+) True G37784
TU47105 lncRNA upstream 521566 48115465 ~ 48115777 (+) True G37733
TU47066 lncRNA upstream 727757 47906060 ~ 47909586 (+) True G37703
TU47266 lncRNA downstream 225367 48863531 ~ 48863760 (+) True G37871
TU47271 lncRNA downstream 276082 48914246 ~ 48914509 (+) True G37876
TU47364 lncRNA downstream 923339 49561503 ~ 49561789 (+) True G37963
TU47367 lncRNA downstream 930428 49568592 ~ 49568857 (+) True G37966
TU47370 lncRNA downstream 934368 49572532 ~ 49572765 (+) True G37969
AMCG00019837 mRNA upstream 95959 48541037 ~ 48541384 (+) True AMCG00019837
AMCG00019836 mRNA upstream 96580 48514674 ~ 48540763 (+) True AMCG00019836
AMCG00019834 mRNA upstream 260310 48363323 ~ 48377033 (+) True AMCG00019834
AMCG00019833 mRNA upstream 284523 48308234 ~ 48352820 (+) True AMCG00019833
AMCG00019835 mRNA upstream 332905 48258596 ~ 48304438 (+) True AMCG00019835
AMCG00019840 mRNA downstream 202882 48841046 ~ 48862434 (+) True AMCG00019840
AMCG00019841 mRNA downstream 303691 48941855 ~ 48990943 (+) True AMCG00019841
AMCG00019844 mRNA downstream 447577 49085741 ~ 49098772 (+) True AMCG00019844
AMCG00019842 mRNA downstream 469795 49107959 ~ 49110875 (+) True AMCG00019842
AMCG00019843 mRNA downstream 473587 49111751 ~ 49118626 (+) True AMCG00019843
TU47161 other upstream 186176 48450628 ~ 48451167 (+) True G37779
TU46904 other upstream 1845858 46791027 ~ 46791485 (+) True G37561
TU46693 other upstream 3297724 45279455 ~ 45339619 (+) False G37372
TU46357 other upstream 4580740 44053074 ~ 44056603 (+) True G37105
TU46181 other upstream 5304030 43330292 ~ 43333313 (+) True G36954
TU47362 other downstream 920318 49558482 ~ 49561383 (+) True G37962
TU47365 other downstream 924730 49562894 ~ 49563214 (+) True G37964
TU47369 other downstream 933023 49571187 ~ 49571486 (+) True G37968
TU47520 other downstream 2205591 50843755 ~ 50845879 (+) True G38084

Expression Profile