RNA id: AMCG00021270


Basic Information

Item Value
RNA id AMCG00021270
length 6635
RNA type mRNA
GC content 0.44
exon number 23
gene id AMCG00021270
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13455243 ~ 13488741 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACCTCTGCTGGAGTGAAATCAAGCGCAAGTCCCACAACATCAGGGCACGTCTGGAGGCCTTCTCTGACAACAGTGGGAAACTGCAGCTCTCCCTGCAGGAGATCATCGACTGGCTCACGCTAAAGGATGAGGAGCTGTCCGAGCAGCTGCCCATTGGGGGCGATGTGGCGGCAGTGCAGCACCAGAGTGAATTCCACCAGGCCTTCATGGAAGATGTGAAATCCAGAGGCCCTTTCATCTACTCAGTCTTGGAGTCTGCACAAGCCTTCCTCTCACAGCACCCCTTCGAGGAGCCAGAGGAGACTCTCTCAGACAGCAAAGATGTGTCTCCTCGCCGTCGCATCCAGAACATCAGCCGCTCAGTGTGGAAGCAGGCCAATGTGGCGAGTGACCTGTGGGAGAAGCTGACGGCGCGCTGCATCGACAGACACCGGCACATGGAGCGTACGCTGGAGCGGCTGCTGGAGGTCCAGGCGGCTATGGAGGAGCTGGGTGTGGCACTGGAGCAGGCAGAGGGTGTGAGGGATGCCTGGGAACCTGTGGGAGATCTCTTCATTGACTCCCTGCAGGACCACATTGATGCCACTAAGTTGTTTAAGGAGGAGCTGACCCAGGTCAAGGAAGGCATGAAGCACATCAATGACCTGGCTCACCAGCTGGCTATCTCTGACGTACACCTGTCCATGGATAACGCGCGCTCCTTAGAACACCTCAACAGCAGATGGAAACAGCTACAGgcCTCCATTGAAGAACGGCTGAAGCAGCTACAGGATGCCCACCGAGATTTTGGACCAGGATCCCAGCATTTTCTCTCAAgTTCTGTGCAGATTCCCTGGGAACGTGCCATATCCCCCAACAAAGTGCCCTACTACATCAACCATCAGGCTCAGACTACTTGCTGGGACCACCCAAAAATGACAGAGCTGTACCAGGCACTGGCTGACCTCAATAACATCAAGTTCTCGGCGTACCGAACAGCCATGAAGCTGCGACGGGTGCAGAAAGCACTGCGCTTGGACCTGCTAACCCTTAGCAGCGTGTCTGATGTATTGCGGGAGCACGACCTGCAGCACAGCGAGCACAGCATGGACGTAGTAGAAGTCATACACTCCCTGACCAGCCTGTACGAGCGGCTGGAAGAGGAGAGGGGTGTCCTTATCAACATCCCGCTCTGTGTGGACATGTGTCTAAACTGGCTGCTCAACGTCTACGACAGTGGCCGTAATGGGAAAGTCCGGGTTCTGTCCTTCAAGGCTGGTCTGGTCTGTCTGTGCAACTCGGATGTTCAggagaaatataaatATCTTTTCAGGCAGGTGTCGGGCCATGGGGGGATGACGGACCAGCGCCACCTCAGCCTGCTGCTGCACGAAGCCATCCAGATCCCCCGACAGCTGGGCGAGGTGGCAGCGTTCGGGGGCAGCAACGTGGAGCCCAGTGTCCGCAGTTGCTTCCGCATGGCCCCAGGGAAACCCGCCATAGAGGTGTCTCACTTCCTGGAGTGGATGAGTCTGGAGCCGCAGTCTATGGTTTGGTTGCCCGTTCTTCACCGTGTGGCCGTGGCCGAATCCGCCAAGCACCAGGCCAAGTGCTCCGTCTGCAAACAGTGTCCCATTAAGGGCTTCAGgtATCGCAGTCTGAAGCAGTTCAACGTGGATATCTGCCAGACCTGCTTCCTTACGGGACGGACCACGAAAGGAAAGAAACTGCACTATCCCATCATGGAGTACTACACACCAACAACCTCTGGGGAGAAAATGCGAGATTTTGCCAAGACTCTAAAAAACAAGTTCCGCTCCAAGCAGTATTTCAGCAAGCATCCGCAAAGAGGATACCTTCCTGTCCAGTCCGTTCTGGAGGCAGAAAGCAGTGAAACGCCCTGTTCTTCTCCGAAGCTGCCCCACGCGGACACCCACTCCAGGATTGAACACTTCGCCAGCAGACTGGCAGAAATGGAAAATCAGAACTGCTCCTTCTTCACGGACAGCCTGTCGCCCGACGAGAGCTTGGATGAAGACCAGTACCTCCTTCGCCACTCCAGCCCCACCCTGGAGCAAGACTCCCCCACTGGGCAATTTGGTGCTGGGCACATCCTGGGCAATATCAACTGTGAGGACAAAGATGAGCTGGAGAGGATTCTGGCCCGACTGGAGAATGAGAACAGAGTCCTGCAGGGGGAGTACCGGCGGCTGAAATGGCAGCATGAGGAAGCCGCTGCCTCTCCCCAGCTTACAGAGGGCGCTCCGGGCTCACCCATGGGCCACCGCGACGAAGAGCTGCTGGCTGAGGCCCGTATCCTGCGACAACACAAGAGCCGGCTAGAGACGCGCATGCAGATCCTGGAGGACCACAACAAACAACTGGAGTCTCAGCTGCATCGGCTGCGAGAGCTCCTGCTGCAGCCCAAAGAGGATTCTGAGGCCAATGGCTCGGCCCCCTCCTCTGTCTCATCGCCCCAGCAGTCGGGAGGCAGCCAGCAGGGGGAGCAAAACAGAGAGACCCCTGAGACTGAAGCTGCAGGTGAGGACTCGGAGCAGGAGCGGCAGGACACGGTGACGCGGCTGGAGGAGGTGATCGAGCAGCTGAGGAATGTCTTCCCACCTGACCCAGGTGAGGAGAGGGCTAAGCCATGCTGATCAGAGGACAGGGAAGGAGGGACCACCCAGCTCAAAGTACGACATCTCTTATCTAAATAGCAAGTTGCCTGCAGTCTGCAGTTCTCTCTACACTGGGATGGGATCCAGGTCATCTTGGCCCACTTCAGCTCACACAAAGACATACGACTGCACGAGAGTGAAGCGTCTTGGATTTTGCACTAACCTACAGACAGCTTTGTTGTCCTCGTTCTGCTGATAAGGAAGCAAGGTGCCAAAGGGTTGCGTTCTTACAGGCACTGTGcaaccagctccagctctgtgCAATGTGCAATGTGAAGCTTTATGAATACAGCACAAAGACCTTACAGATGGGGCTTAACGATGCAAGGAGTGGTTGCTCAGTGTTTTCTGACTGCTAGTAACTCCCGagtgagagttttttttttttggttctctTTTCAGTTGGCTTACAAGGTTCAGAGGTGCAGGAGtgcctttttctgtttctgatgCCAGCTGATGTAATCCGTGTTGACTTCATTGATGATGAGCCTGTTTTAGTAACATGCACACATAACAAAGAGAATAACACATAGCTGCAAGCAAAGCAAGATACAGTACAAGGTTATTTACTCAGTGGGATTGTGCTGTCTCCAGTAAACTCAATGATTTATTAACAACTGCCAAGAGCCAGAGAGCAGATTACTCCCATGCTCCTTGTTGGAGTCATGTTATCCAGCGTAAACGCTATATCTGGTAGCGCTAGCTTCGTGAGCCATAGTTAGtgctcattaaaataatttgtgtggAAATAAAACGCCAGTCGTGATTTCAGTCTTCCCCGGGAAACTTACTGTTCCAAGTCTGACATTGTTTagcgttttatttttcttgattgttttgttttacaagcaCTTCCTGGAAGCTGATTGGTCCGGGTAGTGGCCAGTTTAATGGAGCAAACTAGCCTGTGAAACATAAGAGGAATCAGTGCAGACAATAGATCCCAATAGAGATTGCTACAGGGGGTTTATGTTCTAGATAATGTTAATCTAGGGTGAGCTGATAAGGGTCGGTAGAGCACGGTTAAAAAGCCTTATGCCCAAAAGCCTCTTTGCAGAACAAATGAACTTCATTCTGCTGAGCGGCTGGCTTTGACTGAAGGCCCTCCTCACCTCCTTATCCTTACCCGTGTCTTgactaattttattattaatttgttgtatcatggaatacatttaaaaaatatattcattttgcattttcacaaTCAGAAGGCAGTAAAGGTTCCTGCCAGTGCAATGTACAGTATTTGGTGCAGGGTGAGAGAATGTTCTCAATCAATAAGTGTTGGTCTGTAGTTTGTGTAATAAGATGCAAAGTATATTGTCGTTTTttgtggaatttgttttttgagaAAGTGGAAGTGCAGACATGTTTGACTTTTGGAATGCAAGTGGGTGGTATGTGACTGAGGAGGTGTTACGagggaaaatgaaatgcatctgACAAGTGAATATGCAAAGTGACGTAACCAGAGAaggaagatttatttatttatttatcttgttgTTCATATAGAATTCAACGCCCAGACTCAAAAGAGTcaaaaaatgcataatgcatttGTGGAGAAGCAGTGATCACATAGGTCAAGGGAAAATGCTAATggttatatatttgaatatattgctTACACTGCATTTAGTAGGAGGGGTGTGTAGTTTACAGAACTATAAAAGTTATTTTAGCTCTATATCTTCAAACGCGTCCTTGCATAATCCGTAGCAAACAGAAGAAATCGAGAGAAAAGCTGATGTTTCACTTTGTCCTAAATGCTCCGACAGCAACATTTAACTTTCTAGTTTACTAGCTCTACTAGTTAgctttgttaaaatataattaggaCAGTGTACTGATGCAGCTGAAAAAGGAGTATGTTGATAATAGTTACAGAAAGCAAGGCATTCTTGTCCCAGAAGTAGATAATTATGTTGCATAGATTTTCAGCTTTTATCTACTTTTCAGACTTGGGGGTAGGTTTTTCTTCAGGCTGAATGTGCATATCTGACATCACGAAACTTATGGCTCCTAATTTCCTTGGCATTGTAGGGGATTTGCCTAAAGGAGACTGTGCCACAGGTTTCAGTCTTGCTGGGACAGTCGGGGGCTACAATATTGATTAGACAAGTTGCAGaattaaggaaatgtattagCAGGGGCACATTTCCTCCTTGCAGCCCAGGGTATGTTACAGTTGTATCTAAGCACTACATCAAGGGAACAGTTTTATCCTCTATAGTATAATTAAAATTGACTAAATGTGCTTCTAAAAACTACTGATACactttccttatttatttattgactgattgatttatgtattatgtatttatttgtgttttcttcacatacatatttattaattttatttaatgttttatgtcatAGTTTTTCATCGCAAATGTACCCCAGTGCAACTTCTTTGTATTGACAAAAAACAGTGAAATGGGGGCTGTTACTACAGTAACATTCACTGACACATATACAATCAATTACAATCAGCTGAATACAAACCAATTCAGCATTtaaaattgcacttttatagtaacattttttaactttttgtaattttaatgcattttaaaatgatagtaTATGTAaagtttctttttttgttattgatttaaaaaacaactaattttgATCATATAAATTAGAATTAGACATGCGtaatatagatttttgttttggttaaaaAGCACTTCAGATACaaatcagatttgtattttaagtatatACATTACAACAGATGTATGTATCGTGTACATACACCATTTTCAGTactttgtaatattttacaaaatcctATAGCATGAATATGTAAAAGAACAACAATTTAGagattgcaaaaaaaaatttTTGCACAAAACAATGAATAGTGAAATTGGTTGAAGAAGTAAAAGGACCTTTTTAAAAATCCTACTGCAATTAAGTTACCATAATAACTATAATcgatattttatttgcattttgaatggAATTGTTCAAAAATCAAGAAATCATGCTTCATATTAATGGTATGTTACCGCTGCATACCTAAAAATCACAGCAAAAAGTGCAGTTATACctagtgtgtcagtgtaaaatataaagtttgACTTATCGAGCTCAGCTTTACTCTTTGTGTGAGCTTGAATCATGATGGTCCATCTGTTTGTAACAATCCCatgtttcatttgcattttaaaaactgcatagTGCCAAACTTGTCTCACCTACAGTACCCTGCTATTAACTCACTGCTGGAGTAAATTGTAATGGAGGTGGTCGTCTACTGCTATGCACCGTGATGGAAAGCctataaaatgaaatggtgtTTTGTAtcactgataacattttataGAATATATGTACAGGAAAGTCTGAATATTTTTACCATGCAAATTTAATATGTGTACATTAAATGTGAAGCTccatattattgatttattcctCAGAACCTGTGTGGGTCACCACAGTTTAAAGCACTGCTGTccattaatttaagaaaacattttatgtaaaaaataaaaaaaagttgggGGGGGGAATCTGAACTTTTAAATCAGTCAATCTTCTAGTGAAGTCAAAGCATGTGGCATATTGTGGAAGTTAACCACCCTAGGTGACCTTTCTCAAGCAAAGTTCATCATATGGTTTAATAAACTAAATTCTCGCTTAATTCACACTCTTTATGTAGTCTCCTCCTCAATGCATCACGGTAATGAAAGCTGTGGTTTTAGAGGTctaaatgttgttttctcaaACTTACCTTTTAACCAATTACCTTTCCATGTCTCactttgtgaaaatatattttttgcttttcttttgttaactGAAAATACTTACAGGCTTCTTGCacctgttgtttattttcctcctaATTTGTACAAAATTACTGTggttgactttttaaattaatgggGGTACTGGCTGCTTTCTACTCATATATCTTGTACAGaaataaatttgtatttgttatacgCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105813 lncRNA downstream 791924 12663009 ~ 12663319 (-) True G84822
TU105803 lncRNA downstream 951741 12500240 ~ 12503502 (-) True G84812
TU105774 lncRNA downstream 1252416 12198777 ~ 12202827 (-) True G84785
TU105763 lncRNA downstream 1311880 12141960 ~ 12143363 (-) True G84780
TU105760 lncRNA downstream 1322086 12131302 ~ 12133157 (-) True G84778
TU106048 lncRNA upstream 262465 13751206 ~ 13755469 (-) True G85003
TU106057 lncRNA upstream 347846 13836587 ~ 13837073 (-) True G85009
TU106060 lncRNA upstream 369563 13858304 ~ 13862544 (-) True G85012
TU106061 lncRNA upstream 369563 13858304 ~ 13862472 (-) False G85012
TU106062 lncRNA upstream 371547 13860288 ~ 13862472 (-) False G85012
AMCG00021274 mRNA downstream 14100 13438742 ~ 13441143 (-) True AMCG00021274
AMCG00021268 mRNA downstream 44320 13407362 ~ 13410923 (-) True AMCG00021268
AMCG00021261 mRNA downstream 263235 13186445 ~ 13192008 (-) True AMCG00021261
AMCG00021258 mRNA downstream 364588 13044461 ~ 13090655 (-) True AMCG00021258
AMCG00021260 mRNA downstream 539118 12910567 ~ 12916125 (-) True AMCG00021260
AMCG00021272 mRNA upstream 56889 13545630 ~ 13555697 (-) True AMCG00021272
AMCG00021269 mRNA upstream 68415 13557156 ~ 13561413 (-) True AMCG00021269
AMCG00021273 mRNA upstream 77617 13566358 ~ 13567828 (-) True AMCG00021273
AMCG00021271 mRNA upstream 87007 13575748 ~ 13580652 (-) True AMCG00021271
AMCG00021278 mRNA upstream 123701 13612442 ~ 13622612 (-) True AMCG00021278
TU105842 other downstream 653657 12719864 ~ 12801586 (-) True AMCG00021259
TU105805 other downstream 927549 12527093 ~ 12527694 (-) True G84814
TU104623 other downstream 6908666 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 8704008 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 10773481 2681560 ~ 2681762 (-) False AMCG00021090
TU105989 other upstream 138594 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 381198 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 561233 14049974 ~ 14051897 (-) True G85115
TU106928 other upstream 2752263 16241004 ~ 16242655 (-) False AMCG00021387
TU107075 other upstream 3158398 16647139 ~ 16649825 (-) False AMCG00021412

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_07818095_07875687.mRNA True 3341 mRNA 0.52 23 CI01000000 7818095 ~ 7875910 (+)