RNA id: TU5148


Basic Information

Item Value
RNA id TU5148
length 2258
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G3577
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15303988 ~ 15306245 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGAAAGCAGCATTGCATCCAGCCACAGTACACACATGCATCTCTTTTAGGTGCACATTTTTGTAGTGCAGTTTGACACTGTATGAACTTTTAAAGCTCTTTTTGCAGACGTAGCAAATCTTGGGATCAGGACTAGAACAGAGATCACCATCAGGGGACTGAGAAGAGAATTTTGGTGGGCTTGATCCATAGCTCATAGAAGAGATGAAACTTTCATGTAAGGCCGCCATGCTGGCAGCAGCGGCAGCAGCAGCTGCCATACCCCCATTATAAAGGCTATATTGACCCATGCAGAACATGTCATAAGTAGGATCATTGATCTCCTCCTTGATTTTGATAACAGGCTGGTGTTGGGAGGGTGGAGAATGGCTTTTTTCCTCCAAATCTTTCCGTAGGTGGCCCTCATCATCTGCCCCATGGTGTCCCTTGATTATGTTTCTGTCTAGGACAGGCTGATGTACGTCAGTGTCCATCAGCTCATCACGGTAGAGCATCTTGGATTCAGATGTCTCTGACTCATTTTCAAAATCACGCTCATGATCTTGGTCCTCTGAGGTAAAGCTGTCAATACAACGCAGGTCTCCATGGCCTCTACTGCCATGACTCCCACTGCATTCTTCTTGATCAGGATGGAGCATGCCTCTAAGGGCAAGACTGGGACTCATTTCATCGTGTGATGGAGACTGATGTCCACTACCCCCACAGTGatgactgctgctgctgctgttattgttattgttgcaGTTGCCATTGAGATTGTTATGGATGTTGGATGGctgatggtggtgatgatgacaactatcttcatcatcatcatcatctttgtCATCATAATCATCTGCCACATCAATTATTTCTTTCTCTATCTTTACTGGCATGCTGGATTTGCGAGGCTTCTTTTTAGGCATAGGGTCAACAGTCACAGAATCTTGGTTACTAGGAGCAAGTAGGCGATGAGAAAACGATGTTTCAGATACATGCATGTTGTGGGAGCTAGCAGTTAACATCTGTTGCTGGTCTGTCAGAGATGTGCTGTTGGTTGTGGTAGGCAAAATTGGACTGGTGGGCAAAGAGACTGGGGGACTAACCAAGTCAGCGGGAGAGAGCAGTGTGCGATAAAAAGGTGGCACAGGTTGCACTGGCTGCACAGACTTCAGGGAAGGGAAAACAAGAGGGCTCTGCAGGGGTGACTGCATCATGGGGTCAAGAGGAGGGGTGGCAAAGCTTAGTGGTGGTCGCCCAGGGCTAGTTAGATTGAAGCCACTTTTGGCACTTGATATGACAGGTGTTGCTGTTCCAGAACTGGAGCGAATGAGGTCCTTGTCCCGGTTGTTCCTTAGCATGGGCATATGAAGACGAGGATTGGGATTAGCGCTATGTCGGTTACGACTTCTCAGTGAACTAAAGACCATATTACAGCCTTCAATAGTACATCGGTGCTTAATCTTCAGATGCACAGCATTGTAGTGGATCTTTAGAGTACCCTTATCATAGAAAGTCTTGCCACAGGAGTTGCAGCAGACACGACCCTTACGTGAGGTTGCACCCATACGACGCATGCGATGCAttttggaagaaaaagaagagtgTGTAATGGTTTTCGATTGTTCATTCTTTTCAAAGTGGTGATGGATCTGGTGGTTGTTCAGAGTACTTGATTGCTGTTGTTGCTGTCCCTGTGGTTGATGTGTTGGTGTTTGCGGTTGCTGAGACTGCTGTGAAGATGGTGTTGGAGAGATGGGTGAAGCTCTGTTGGGTTCTATCTTAGGTTCAATGGCGTTAGGTAAGGTTCCCAGTGTTCCGCGACTGGGGCTCTGACCATTACGAAATGGTGAGAGGGACACTTCAGATTCACTGGTCTCCACTGGCTCACTCTGATTGGGCAAATTTGGCTCTCGCATTCTGAGACCAGATTGATCAATGGACAGTCCATTTGGTGGCAGCCCTAACATAGGGGCTGACACTGGGTTGATGTACTGGAAGGGCAACAAAAAGGCCAGACTGTTTGGGATGTTCTCAAAATGGTGAATGCTAGAGGGGCTGTTGTTTTCTAGGTGTGATAGAAGGCCAGGACTGCGTGTGCGATTGTTGCTTTCAATAAAAGTCCTGATTCCAGAGTCAGTCTTTGATGAGGGTACTGTGACTGCCTGACCCTCCTTTTCCTGAATGGCCATCAATTCCACAATAGACTTGGTTTCACCAAAGCGCAGAAACTGTTGAAGAGTGATGATCTCCTCTTCCCGAGACATTATAGTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5143 lncRNA downstream 28677 15274884 ~ 15275311 (-) True G3572
TU5141 lncRNA downstream 74235 15229336 ~ 15229753 (-) True G3570
TU5112 lncRNA downstream 299700 15001285 ~ 15004288 (-) True G3546
TU5078 lncRNA downstream 385202 14898206 ~ 14918786 (-) False cxxc4
TU5052 lncRNA downstream 455412 14848025 ~ 14848576 (-) True G3502
TU5149 lncRNA upstream 403 15306648 ~ 15306904 (-) True G3578
TU5152 lncRNA upstream 4090 15310335 ~ 15310542 (-) True G3581
TU5153 lncRNA upstream 4659 15310904 ~ 15311170 (-) True G3582
TU5154 lncRNA upstream 7201 15313446 ~ 15317623 (-) True G3583
TU5158 lncRNA upstream 40105 15346350 ~ 15346691 (-) True G3587
XM_043237482.1 mRNA downstream 125542 15097021 ~ 15178446 (-) True cntln
XM_043237487.1 mRNA downstream 125678 15097021 ~ 15178310 (-) False cntln
XM_043237474.1 mRNA downstream 125678 15097021 ~ 15178310 (-) False cntln
XM_043237495.1 mRNA downstream 131722 15097021 ~ 15172266 (-) False cntln
XM_043237492.1 mRNA downstream 131722 15097021 ~ 15172266 (-) False cntln
XM_043246182.1 mRNA upstream 220909 15527154 ~ 15581541 (-) True pspc1
XM_043241066.1 mRNA upstream 279334 15585579 ~ 15626410 (-) True dnajb14
XM_043242847.1 mRNA upstream 325820 15632065 ~ 15650309 (-) True sugt1
XM_043232636.1 mRNA upstream 394864 15701109 ~ 15709846 (-) True snapc3
XM_043246259.1 mRNA upstream 760482 16066727 ~ 16069295 (-) True spp2
TU5142 other downstream 73102 15230539 ~ 15230886 (-) True G3571
TU5072 other downstream 274368 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 378625 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 555013 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 1419752 13882278 ~ 13884236 (-) False LOC122350629
XR_006251556.1 other upstream 762932 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 2509579 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 4229727 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 4790710 20096955 ~ 20097026 (-) True trnae-cuc_3
unassigned_transcript_104 other upstream 4806505 20112750 ~ 20112821 (-) True trnam-cau

Expression Profile