RNA id: XM_043237495.1


Basic Information

Item Value
RNA id XM_043237495.1
length 3598
RNA type mRNA
GC content 0.54
exon number 26
gene id cntln
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 15097021 ~ 15178446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAACTGGCGCGATCATTTGAAACCGTCAAGGCGTGTGTTTGTATTTCCACTTAAATGAgctctgttttcagttttcccGTTTTCAAACTCTGATGAGAATATGCTGTCAGATGTGATCAGAATGGTGATTTAATGATATTGCAGATCTTCACTTTGCATAATCGATCTCAATGGACTCGAAAGACAAGGAACGTGTTTTACTCCTGGAGGAAGAGGTGAGGAGCTTGTCCGAGGAACTCGCTCAGTGCCAGACAGACAAGGAGTTTGTGTGGTCACTTTGGAAGAGACTTCAAGTGGCCAGTCCAGACCTGACCCAGGCAGTGAGTCTTGTAATGGAAAGAGAAAAGCAGAAAGCTGAGAACAAGGACAGGAAAGTTCTGGAGATCCTTCAAGCAAAAGACTACAGAATCCAAGAGCTGGAGCAGAAAGTGACGGCACAAGAGCAGGAGATAAACAACCGAGTCCAGCAGTTGCGTGGCAGTGAGGAGGAGTGCGGTCTAATGAAGAAAGAACTGGCAGCTCTGCAGCACAGACTGGGGAATAAGAGTCGACAACTTAAGGAAGCGAGGAGGCAGGCGGAGGAGTGCGAGGAGGAGGGCAGGCGTGCCCTACAGGAAGCCAGGCAACAATTAGATGCTCAGCACTCAGCCTCTCAGGCAGAGCTGGAGAGATTGCAGGACCAAGAGGCCGTCAGCAGTTCCAGAGTCAAGAATCTGGAAGAGGAACTATTCAAAAGCAGACAGGAAGTGCTAGAAGCCCAGAGCCGCTCAACTGCTTTGTCCCTTCAGCTTTCCACTGTAGAACGGGAAGGAGCTGACAAAGAACAACAGCTCTGTCGAATCAAACGCGAGCTCCAGGACTTGCAGGGTCTGTACAGGCAGAGCGTAGAACATGCAGGAGAACAGGCCCAGCTCATTCAGCAGCTGGAGGGGCTTAACCTGGACACGCAAAGAGTCCTGCGCAGCCAAGAGGAGGCCCACACGGCAGACACCGTCTCCTACCAGAAGCTCCACAGCGAGCTGAGCGTGTCATACCAAGCCCTTTGGCACAGCCAGGAACAGCTCCGCCAGCGGGAAGCAGCCCTCAGCATGCAGCTCAGCCAGAGAGATCAGCAGATCCAAGAACTCCAGGCACAGCTGCAGAGTTTCACAGCCGCCGCGGGGCACTGTGAGGGCGCCGGGTCTCTGTCTCCAGGTGGCGGCAGCAGTGATGGAGCAGACAGTCAGGAGAAAAGGATCCAGTGGCTGCAGGAATTACTTGAGCTTAAGACTAAGGAGAATGAGGATCTGCGAAGAGCCCATGCCAAACATCATGACCGCTTACGAATCATTCAGACCAACTACAGAACAGTGACAGAGCGGCTGAAGGAAGCCGAAGATACCCATGACTTgTCAGAATGCAAAGCACAGTTTCAGCAGGACAGCGAGGACTTATGGAACGAATTGGTGTTTTATAAGGAGGAGAACAAGAAGCTACTCTCTGACAAAGCTAATCTGGAGGAGGAACTAAACGCAGCCCTCGACAGAGTTGCAGTGCGGGACCTACAAGAGCATCAGCAGGAGGAAACGCAAGCAGAGCTTCTGTTTCGGGAAGTGCCGGAGGACGAGGTCAGGAGGAGCAGCACCCCCATCAAGACAACTGCCAGAAGAGTGGAACAGACTTTTAAAAAGATAGAGCAGTTACAAAGTCAAATGGTCTCTCTGGAGAGCGAGATCGTGCGGCTGCGAGAAAACAACCGGTCGCTACAGGAAGCCAAGGGAGCTCTGGCTGGAGAGAGGGGTGATCTGCAGGCCAGAGTTCAGCTTCTGCAGGAACGCAAGGAGACGGAAGAGGCCCAGGCCAGAGAAGAACGGAACCGACTGCTGGCCCAGATGCAAAGCTTTGAGAGACAGGCGAAGGAGGCCGTGAAAGCTGCCACCCAGGCCAGACGCAGGCTGCTCAAACTCCGCCAGGAGCTGGGAGTCCTTCGAGCAGAGAGAGATTTCCATCGGTCCGCGGCTAAACGCAGGGCAAAAGCCGCCACTCTGGCGAACAACAAGATCAGGTCCAAAGCACCCTGGGTCGACGCCTCCAGCGCAACGCGCATGCGCTCGACGCTGAACAGGATGGACAGTCCCGCCAAGGACGACTGGGAGGACATGAGCGCAGACAGTGACAGTGAAGAGTTCTCTGACAGCCTGGAAAGTCGATATTCTGCTCAAGCTCGTCGAGTTTCAAGGAAAACTAAGGGCTGCAGGTACATGCCGATCTGCCCCACGGACAGGCCTGGAGAGGAATCTCAAACCAGGAACATCCAGTTCCAAGGTGCCTCCCTGCAAAAGATCAGGAAGAAAAGAATCTCAAAGTCCCATGCTGTTTTGCAGCAGCGTCTTCTGTCCCTCCAGCAGCAAGTGGCAGCTCTACAGGCAGACAGACAAGCAGCAGAGCGGCTTGCAGCAGAGCAGAGCCACAGACGAGCACAAACTCAGGCGCAGTTAGACTCCCTTCTCCAGCAACTCAGCGCCAGCAAGCAGCTTTCAAAGAAGCAGGCGTGCGAGCTGGCTGGTCTGGAGCAGCAGAAGGCATCTCTGCAGACGGAGTTAGAGCAGTGGAGACGAATACGGCAGCAAACGTCAATGAACCCCCCCGCCGTGGACCCCGAGCGCCTGCAGGCCCAAGTCAAACAGCTCGCTCACCGACTGAAGAATGCCAGCAGTGAGATGAGCAAACACACTGCTGCTAACAAGAGCCTGAGGGCTCAGTTAGATGAAAGAGATCAGACACTGAAGGAACTGCACGAGAGGGTTGGTGTTTTAGAGAGAGATGTGACGATGAAAAGGCAGCTGGTGGAGGATCTCAGGTGCAGACTAAAGATTTGCCAGGACTCCGAAAGAAGCCAAAGAGCAGTGACTGAAGACTTGGAGAAGAAAatgAAATCTCTCACTGATGAGTCAACTAACCGGAAAGCCCTTGTCGACTCTCTAAAGAGAAGATTGACAGTTgccactgcagaaaaaaaacagcatgaggCAACCGGCCAAAAACTCAAAGAAGAGCTTCAGAAAAAGGAACAGCGGTTGACCGTCCTCCAGGCGCGCGTAAGCGAGCGCGATCAGGCCATGGCCGAGCTGGAGCAGACCGCGTCTAAACAGATGCACGGTTTGGCCGAACAGAGCTCTCAGGCTTTGGAAACACTGCAGAGAAAACTTGCCCTCGCCGAGTCCCAGCGGCACCAGTTCCACACATTCACAGAGGCACTGGCTAATCATCTGGCACAGGATGTGCAGGATATTAAAGCCCATTTGAGGAGGGAGAAAAAGAGCGAAAGAGAAGGAAGCAGAATGACTAAACGGTCGCTAGTGAAAGCGGCGTCTATCCTCAACATGACAGAAACGGACCTGGTGAACATGCTGGACACAGATGAGTGTGAGGAGGCGTTTGTGGGTCGTGGGCCAGACACGGATTGGGCTGAACATGTACAACACATCCTTCAGCAGCAGATCCCCTCTGCAGGCCTGCTGATGGACGCCATGCTGGTGAAGATGAAGGAGGGCAAAGTGCTGACAGAGGAACTGGCTGCACTTACAGCCGCAGTCAGCAAAAACGCCTGaccggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU5112 lncRNA downstream 92733 15001285 ~ 15004288 (-) True G3546
TU5078 lncRNA downstream 178235 14898206 ~ 14918786 (-) False cxxc4
TU5052 lncRNA downstream 248445 14848025 ~ 14848576 (-) True G3502
XR_006249238.1 lncRNA downstream 323101 14772740 ~ 14773920 (-) True LOC122336348
XR_006249191.1 lncRNA downstream 324291 14771467 ~ 14772730 (-) True LOC122336242
TU5141 lncRNA upstream 57070 15229336 ~ 15229753 (-) True G3570
TU5143 lncRNA upstream 102618 15274884 ~ 15275311 (-) True G3572
TU5148 lncRNA upstream 131722 15303988 ~ 15306245 (-) True G3577
TU5149 lncRNA upstream 134382 15306648 ~ 15306904 (-) True G3578
TU5152 lncRNA upstream 138069 15310335 ~ 15310542 (-) True G3581
XM_043249833.1 mRNA downstream 17611 15063437 ~ 15079410 (-) True sh3gl2a
XM_043233686.1 mRNA downstream 44145 15050819 ~ 15052876 (-) True foxe1
XM_043249659.1 mRNA downstream 59346 15033169 ~ 15037675 (-) False trmo
XM_043246182.1 mRNA upstream 354888 15527154 ~ 15581541 (-) True pspc1
XM_043241066.1 mRNA upstream 413313 15585579 ~ 15626410 (-) True dnajb14
XM_043242847.1 mRNA upstream 459799 15632065 ~ 15650309 (-) True sugt1
XM_043232636.1 mRNA upstream 528843 15701109 ~ 15709846 (-) True snapc3
XM_043246259.1 mRNA upstream 894461 16066727 ~ 16069295 (-) True spp2
TU5072 other downstream 67401 15020642 ~ 15029620 (-) True G3515
TU5081 other downstream 171658 14925085 ~ 14925363 (-) True G3522
TU5035 other downstream 348046 14746829 ~ 14748975 (-) True G3491
TU4627 other downstream 1212785 13882278 ~ 13884236 (-) False LOC122350629
TU4632 other downstream 1254378 13841542 ~ 13842643 (-) False LOC122350606
TU5142 other upstream 58273 15230539 ~ 15230886 (-) True G3571
XR_006251556.1 other upstream 896911 16069177 ~ 16073920 (-) False alg11
XR_006250498.1 other upstream 2643558 17815824 ~ 17880417 (-) False znf827
TU6528 other upstream 4363706 19535972 ~ 19539146 (-) True cdk2ap2
unassigned_transcript_102 other upstream 4924689 20096955 ~ 20097026 (-) True trnae-cuc_3

Expression Profile